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The map label for this gene is ybaK [C]

Identifier: 220904868

GI number: 220904868

Start: 1928068

End: 1928556

Strand: Direct

Name: ybaK [C]

Synonym: Ddes_1602

Alternate gene names: 220904868

Gene position: 1928068-1928556 (Clockwise)

Preceding gene: 220904867

Following gene: 220904869

Centisome position: 67.1

GC content: 58.28

Gene sequence:

>489_bases
ATGTCCGCCAAGATATCCAAGACCAATGCCGCCCGTCAGCTGGAAAAACAGGGCATAGCCCATACCCTGCACCAGGTTGC
CGTAGACGAAAACGATCTCTCCGCCGTTACCATGGCCCGCCAGCTTGGAGTAGAGCCACAACGTGTTTTCAAGACCCTGG
TTGCCCGCGGAGACAAAACAGGCGTACTTATGGCCTGCATACCTGCCGGTACAGAGCTGAACCTCAAGGCGCTTGCTGCC
GCTTCGGGCAACAAGCATACGGAAATGGTTCACCTCAAGGACGTGCGCCCTCTCACAGGCTATGTGCGCGGCGGCTGTTC
TCCGCTGGGCGGCAAGAAAAACTATCCTGTTTTTGTGGACGCCAGCGCCCTTGAGCAGGAAAGCATCTATATAAGCGCTG
GCCTGCGCGGCGTGCAGATATGCCTGTCGCCACAAGACCTGCTCCGGGCCGTAACCGGCGATACAGCCAATATCGCCCGA
CAGGCCTGA

Upstream 100 bases:

>100_bases
TTGCCAAACCTTTTAATCTGGTAACGCTGCGCAACAAGATAGTTCAGTGGCTTGGCCTCTGCTGAACAAACCCGCGCCGC
TTCAAGCCCCTGCAAAAAAC

Downstream 100 bases:

>100_bases
CCTTCCGCCTGCCGCCGTTTGATGAGCGGAATGCCGCCCCGGCGTAGCTCCGGCCCCCCCGGCACATCCGACCCATGTGA
CTGATCCTTTTCCCGGCAGG

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSAKISKTNAARQLEKQGIAHTLHQVAVDENDLSAVTMARQLGVEPQRVFKTLVARGDKTGVLMACIPAGTELNLKALAA
ASGNKHTEMVHLKDVRPLTGYVRGGCSPLGGKKNYPVFVDASALEQESIYISAGLRGVQICLSPQDLLRAVTGDTANIAR
QA

Sequences:

>Translated_162_residues
MSAKISKTNAARQLEKQGIAHTLHQVAVDENDLSAVTMARQLGVEPQRVFKTLVARGDKTGVLMACIPAGTELNLKALAA
ASGNKHTEMVHLKDVRPLTGYVRGGCSPLGGKKNYPVFVDASALEQESIYISAGLRGVQICLSPQDLLRAVTGDTANIAR
QA
>Mature_161_residues
SAKISKTNAARQLEKQGIAHTLHQVAVDENDLSAVTMARQLGVEPQRVFKTLVARGDKTGVLMACIPAGTELNLKALAAA
SGNKHTEMVHLKDVRPLTGYVRGGCSPLGGKKNYPVFVDASALEQESIYISAGLRGVQICLSPQDLLRAVTGDTANIARQ
A

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=157, Percent_Identity=36.9426751592357, Blast_Score=94, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17192; Mature: 17061

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKISKTNAARQLEKQGIAHTLHQVAVDENDLSAVTMARQLGVEPQRVFKTLVARGDKT
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC
GVLMACIPAGTELNLKALAAASGNKHTEMVHLKDVRPLTGYVRGGCSPLGGKKNYPVFVD
CEEEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEE
ASALEQESIYISAGLRGVQICLSPQDLLRAVTGDTANIARQA
HHHCCCCCEEEECCCCEEEEEECHHHHHHHHCCCCHHHHCCC
>Mature Secondary Structure 
SAKISKTNAARQLEKQGIAHTLHQVAVDENDLSAVTMARQLGVEPQRVFKTLVARGDKT
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC
GVLMACIPAGTELNLKALAAASGNKHTEMVHLKDVRPLTGYVRGGCSPLGGKKNYPVFVD
CEEEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEE
ASALEQESIYISAGLRGVQICLSPQDLLRAVTGDTANIARQA
HHHCCCCCEEEECCCCEEEEEECHHHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]