| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is engD [H]
Identifier: 220904219
GI number: 220904219
Start: 1103026
End: 1104129
Strand: Reverse
Name: engD [H]
Synonym: Ddes_0946
Alternate gene names: 220904219
Gene position: 1104129-1103026 (Counterclockwise)
Preceding gene: 220904220
Following gene: 220904210
Centisome position: 38.43
GC content: 57.07
Gene sequence:
>1104_bases ATGGCCCTCAGCATAGGTATCGTCGGTCTGCCCAACGTGGGCAAGTCCACTCTTTTCAATGCCCTTACCAAGGCCCAGAA CGCCCAGGCCGCCAATTACCCCTTCTGCACCATCGAGCCAAACAAGGCTACGGTGGCCGTGCCGGACACGCGCCTGCAGG ATCTGACAAACAAGGCAAAACCACAAAAAACCATCAACGCCAGTGTGGATTTTATCGACATTGCCGGTCTTGTGCGGGGA GCCAGTAAGGGTGAAGGCCTTGGTAACCAGTTTTTGGGCAACATCCGCGAATGCGCGGCCATAGTTCATGTGGTACGCTG CTTTGAGGATGAAAACATCACCCACGTTGACGGCGGCGTTGATCCCCTGCGTGATGTGGACACCATTGAGACGGAGCTTT TGCTGGCCGACCTGCAAAGTGTTGAAAAACGCCTTGAACGTCTGCAAAAGATGTCCAAGGGCAACAAGGACGCCAAGGCA GCTGCCGAAGTGATGCAGACCCTGCAGACGCACCTGAATGACGGCAAGGCCGCCCGCGAATTTGCCCTGCCGGAAGGCAA CGAGGCCTTTCTGGCTTCGTGGCGTGAACTGGGTCTTCTGACAGCCAAGCCCGTTATCTACTGCGCTAACGTGGATGAAA ACGCCGTGGCCGAGGGCAACGCCTTTGTGGAAACCCTCAAAAACTTTGCTGCCGGGCGCAACGCAGGCTTTGCCTGTATT TGCGCCAAGCTCGAAGAAGAACTGCAGGGGTTGTCCGATGCCGAACAGGCCGAAATGCTTTCGTCGTACGGCATTACCGA AAGCGGCCTTGTGCGCATCATCCGCACCGGCTACGAAACACTGGGCCTTTGCAGCTACTTTACGGTCGGCCCCCAGGAAG TGCGGGCCTGGACCATTCACAAGGGCTGGAAGGCCCCCCAGGCTGCCGGGGTCATTCATACGGACTTTGAACGCGGCTTC ATCCGTGCCGAGGTCATCTCTTACCAGGACTACATGAGCCACGAAAACGAGGCCGCCTGCCGCGCCAGCGGCGTGCTGCG TGTGGAAGGCAAAGAATATGTGGTCAAGGATGGGGATGTCATGCATTTTCTTTTCAACGTGTAG
Upstream 100 bases:
>100_bases CAGCTCAGTATGGACACCGACCCGGCCCCCTCCGGAGCAGCCGCGCGTGTGCGGCCCGGACGCCCGCCGGGTCTTGACTG GTGACAATTCAGGAGAAAGC
Downstream 100 bases:
>100_bases CGCAGCTGCTTGTCTGAAGTGTCCTGACTGTCCGCACATGGGGCCTGCGCTGCGGGAGTTTGTGTACCCCAGCCACCAGG CATGGCAGCAGGGTAGAAAT
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MALSIGIVGLPNVGKSTLFNALTKAQNAQAANYPFCTIEPNKATVAVPDTRLQDLTNKAKPQKTINASVDFIDIAGLVRG ASKGEGLGNQFLGNIRECAAIVHVVRCFEDENITHVDGGVDPLRDVDTIETELLLADLQSVEKRLERLQKMSKGNKDAKA AAEVMQTLQTHLNDGKAAREFALPEGNEAFLASWRELGLLTAKPVIYCANVDENAVAEGNAFVETLKNFAAGRNAGFACI CAKLEEELQGLSDAEQAEMLSSYGITESGLVRIIRTGYETLGLCSYFTVGPQEVRAWTIHKGWKAPQAAGVIHTDFERGF IRAEVISYQDYMSHENEAACRASGVLRVEGKEYVVKDGDVMHFLFNV
Sequences:
>Translated_367_residues MALSIGIVGLPNVGKSTLFNALTKAQNAQAANYPFCTIEPNKATVAVPDTRLQDLTNKAKPQKTINASVDFIDIAGLVRG ASKGEGLGNQFLGNIRECAAIVHVVRCFEDENITHVDGGVDPLRDVDTIETELLLADLQSVEKRLERLQKMSKGNKDAKA AAEVMQTLQTHLNDGKAAREFALPEGNEAFLASWRELGLLTAKPVIYCANVDENAVAEGNAFVETLKNFAAGRNAGFACI CAKLEEELQGLSDAEQAEMLSSYGITESGLVRIIRTGYETLGLCSYFTVGPQEVRAWTIHKGWKAPQAAGVIHTDFERGF IRAEVISYQDYMSHENEAACRASGVLRVEGKEYVVKDGDVMHFLFNV >Mature_366_residues ALSIGIVGLPNVGKSTLFNALTKAQNAQAANYPFCTIEPNKATVAVPDTRLQDLTNKAKPQKTINASVDFIDIAGLVRGA SKGEGLGNQFLGNIRECAAIVHVVRCFEDENITHVDGGVDPLRDVDTIETELLLADLQSVEKRLERLQKMSKGNKDAKAA AEVMQTLQTHLNDGKAAREFALPEGNEAFLASWRELGLLTAKPVIYCANVDENAVAEGNAFVETLKNFAAGRNAGFACIC AKLEEELQGLSDAEQAEMLSSYGITESGLVRIIRTGYETLGLCSYFTVGPQEVRAWTIHKGWKAPQAAGVIHTDFERGFI RAEVISYQDYMSHENEAACRASGVLRVEGKEYVVKDGDVMHFLFNV
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=370, Percent_Identity=43.7837837837838, Blast_Score=305, Evalue=4e-83, Organism=Homo sapiens, GI58761502, Length=227, Percent_Identity=37.4449339207048, Blast_Score=149, Evalue=3e-36, Organism=Escherichia coli, GI1787454, Length=368, Percent_Identity=51.9021739130435, Blast_Score=379, Evalue=1e-106, Organism=Escherichia coli, GI1789574, Length=129, Percent_Identity=31.0077519379845, Blast_Score=68, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17509631, Length=369, Percent_Identity=42.2764227642276, Blast_Score=291, Evalue=3e-79, Organism=Saccharomyces cerevisiae, GI6319499, Length=371, Percent_Identity=40.4312668463612, Blast_Score=252, Evalue=6e-68, Organism=Saccharomyces cerevisiae, GI6321773, Length=380, Percent_Identity=37.3684210526316, Blast_Score=236, Evalue=5e-63, Organism=Saccharomyces cerevisiae, GI6321649, Length=183, Percent_Identity=35.5191256830601, Blast_Score=86, Evalue=6e-18, Organism=Drosophila melanogaster, GI24640873, Length=369, Percent_Identity=42.5474254742547, Blast_Score=290, Evalue=1e-78, Organism=Drosophila melanogaster, GI24640877, Length=369, Percent_Identity=42.5474254742547, Blast_Score=290, Evalue=1e-78, Organism=Drosophila melanogaster, GI24640875, Length=369, Percent_Identity=42.5474254742547, Blast_Score=290, Evalue=1e-78, Organism=Drosophila melanogaster, GI24640879, Length=327, Percent_Identity=39.7553516819572, Blast_Score=235, Evalue=4e-62, Organism=Drosophila melanogaster, GI20129375, Length=152, Percent_Identity=30.2631578947368, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 39929; Mature: 39797
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALSIGIVGLPNVGKSTLFNALTKAQNAQAANYPFCTIEPNKATVAVPDTRLQDLTNKAK CEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHCC PQKTINASVDFIDIAGLVRGASKGEGLGNQFLGNIRECAAIVHVVRCFEDENITHVDGGV CCHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC DPLRDVDTIETELLLADLQSVEKRLERLQKMSKGNKDAKAAAEVMQTLQTHLNDGKAARE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHH FALPEGNEAFLASWRELGLLTAKPVIYCANVDENAVAEGNAFVETLKNFAAGRNAGFACI HCCCCCCHHHHHHHHHCCCEECCCEEEEECCCCCCHHCCHHHHHHHHHHHCCCCCCHHHH CAKLEEELQGLSDAEQAEMLSSYGITESGLVRIIRTGYETLGLCSYFTVGPQEVRAWTIH HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHEEEEEE KGWKAPQAAGVIHTDFERGFIRAEVISYQDYMSHENEAACRASGVLRVEGKEYVVKDGDV CCCCCCCCCCCEEECHHCCHHHHHHHHHHHHHCCCCCHHHHHCCEEEECCCEEEEECCCE MHFLFNV EEHEECC >Mature Secondary Structure ALSIGIVGLPNVGKSTLFNALTKAQNAQAANYPFCTIEPNKATVAVPDTRLQDLTNKAK EEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHCC PQKTINASVDFIDIAGLVRGASKGEGLGNQFLGNIRECAAIVHVVRCFEDENITHVDGGV CCHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC DPLRDVDTIETELLLADLQSVEKRLERLQKMSKGNKDAKAAAEVMQTLQTHLNDGKAARE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHH FALPEGNEAFLASWRELGLLTAKPVIYCANVDENAVAEGNAFVETLKNFAAGRNAGFACI HCCCCCCHHHHHHHHHCCCEECCCEEEEECCCCCCHHCCHHHHHHHHHHHCCCCCCHHHH CAKLEEELQGLSDAEQAEMLSSYGITESGLVRIIRTGYETLGLCSYFTVGPQEVRAWTIH HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHEEEEEE KGWKAPQAAGVIHTDFERGFIRAEVISYQDYMSHENEAACRASGVLRVEGKEYVVKDGDV CCCCCCCCCCCEEECHHCCHHHHHHHHHHHHHCCCCCHHHHHCCEEEECCCEEEEECCCE MHFLFNV EEHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]