| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is map [H]
Identifier: 220903955
GI number: 220903955
Start: 811579
End: 812373
Strand: Direct
Name: map [H]
Synonym: Ddes_0681
Alternate gene names: 220903955
Gene position: 811579-812373 (Clockwise)
Preceding gene: 220903954
Following gene: 220903956
Centisome position: 28.24
GC content: 58.24
Gene sequence:
>795_bases ATGAAGAAATATCACGGCGCGTACATCAAGAATGAGCGTGAAATCGGCTGCCTGCGCGAAGCTAACCGCATGGTCGCCAA CGTTCTTGATGCCGTGGGCGACATGGTGGCTCCCGGCCTTCCCACTATGCGCCTTGAAGAGCTGGCGCGCGATATGTGCG CCGATTACAAGGTCAAACCGGCCTTTTTGGGCTACTGCGGCTATCCATATGCCCTGTGCTGCTCGGTCAACGAGCAGGTG GTGCATGGTTTTCCTTCCGGGCGGCTGCTTGAGGAAGGGGATATTGTCAGTGTGGATATGGGCGTAGTCTTTGAAGGCTT TGTTGGCGATGCGGCACGCACCTTTCCTGTGGGCAAGGTGAGCGACGAAGCCAGAAAACTCATGCGGATTACCGAGGAAA GCCTCTATGTCGGCATTGAGCAGGCGCGGGCAGGCAATGATGTGTATAACATCGGCGCCGCCGTGCAGGATTATGTGGAA GCCGCAGGTTTTAACGTAGTGCGGCGTTTTGTGGGGCACGGCGTGGGCGCCAAGATGCACGAAAAGCCCGAGGTGCCCAA CTTCAGGCCCGGCATGCGCGGGCTGACCCTGCAAAACGGCATGGTGATAGCCATTGAACCAATGGTCACCATGGGGACCT ACGAGGTCGACATACTTGACGACCAGTGGACTGCGGTGACGCGCGACGGCCTTTGGGCCGCGCACTTCGAACACAGTGTT GCCATTACGCCGTCCGGGCCGCAAATCCTCAGCATCTCGGATCGTGGACTCAACCGGCACACCATCGAAGGTTGA
Upstream 100 bases:
>100_bases TTATGAATCAGGTGGAATCGCATATGATTTCCAGCCAGTATCAGGGCCTGATGGCCAAGGCGCGCAAAAGCGGCCGGCTG TAACCAACGGGTGATGGAGT
Downstream 100 bases:
>100_bases CAGAACAGGTAAAGCCGGATAAAGATTTCCGTTCACGTCCTTTTGTTTGGAGGACGTCGGTCAGCCGTCTGTGCGGCCTG TGCCGGTATGCCGGAGACTT
Product: methionine aminopeptidase, type I
Products: NA
Alternate protein names: MAP; Peptidase M [H]
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MKKYHGAYIKNEREIGCLREANRMVANVLDAVGDMVAPGLPTMRLEELARDMCADYKVKPAFLGYCGYPYALCCSVNEQV VHGFPSGRLLEEGDIVSVDMGVVFEGFVGDAARTFPVGKVSDEARKLMRITEESLYVGIEQARAGNDVYNIGAAVQDYVE AAGFNVVRRFVGHGVGAKMHEKPEVPNFRPGMRGLTLQNGMVIAIEPMVTMGTYEVDILDDQWTAVTRDGLWAAHFEHSV AITPSGPQILSISDRGLNRHTIEG
Sequences:
>Translated_264_residues MKKYHGAYIKNEREIGCLREANRMVANVLDAVGDMVAPGLPTMRLEELARDMCADYKVKPAFLGYCGYPYALCCSVNEQV VHGFPSGRLLEEGDIVSVDMGVVFEGFVGDAARTFPVGKVSDEARKLMRITEESLYVGIEQARAGNDVYNIGAAVQDYVE AAGFNVVRRFVGHGVGAKMHEKPEVPNFRPGMRGLTLQNGMVIAIEPMVTMGTYEVDILDDQWTAVTRDGLWAAHFEHSV AITPSGPQILSISDRGLNRHTIEG >Mature_264_residues MKKYHGAYIKNEREIGCLREANRMVANVLDAVGDMVAPGLPTMRLEELARDMCADYKVKPAFLGYCGYPYALCCSVNEQV VHGFPSGRLLEEGDIVSVDMGVVFEGFVGDAARTFPVGKVSDEARKLMRITEESLYVGIEQARAGNDVYNIGAAVQDYVE AAGFNVVRRFVGHGVGAKMHEKPEVPNFRPGMRGLTLQNGMVIAIEPMVTMGTYEVDILDDQWTAVTRDGLWAAHFEHSV AITPSGPQILSISDRGLNRHTIEG
Specific function: Removes the amino-terminal methionine from nascent proteins [H]
COG id: COG0024
COG function: function code J; Methionine aminopeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24A family [H]
Homologues:
Organism=Homo sapiens, GI164420681, Length=241, Percent_Identity=36.9294605809129, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI40385867, Length=243, Percent_Identity=34.9794238683128, Blast_Score=162, Evalue=3e-40, Organism=Escherichia coli, GI1786364, Length=250, Percent_Identity=40.4, Blast_Score=196, Evalue=2e-51, Organism=Caenorhabditis elegans, GI71996291, Length=238, Percent_Identity=36.5546218487395, Blast_Score=164, Evalue=5e-41, Organism=Saccharomyces cerevisiae, GI6323273, Length=248, Percent_Identity=32.258064516129, Blast_Score=155, Evalue=5e-39, Organism=Drosophila melanogaster, GI21355531, Length=248, Percent_Identity=36.2903225806452, Blast_Score=171, Evalue=6e-43, Organism=Drosophila melanogaster, GI24583427, Length=243, Percent_Identity=32.5102880658436, Blast_Score=157, Evalue=5e-39,
Paralogues:
None
Copy number: 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR002467 [H]
Pfam domain/function: PF00557 Peptidase_M24 [H]
EC number: =3.4.11.18 [H]
Molecular weight: Translated: 28958; Mature: 28958
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYHGAYIKNEREIGCLREANRMVANVLDAVGDMVAPGLPTMRLEELARDMCADYKVKP CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCH AFLGYCGYPYALCCSVNEQVVHGFPSGRLLEEGDIVSVDMGVVFEGFVGDAARTFPVGKV HEEECCCCCEEEEECCCHHHHHCCCCCCEECCCCEEEEECCEEEECCCCCCHHHCCCCCC SDEARKLMRITEESLYVGIEQARAGNDVYNIGAAVQDYVEAAGFNVVRRFVGHGVGAKMH CHHHHHHHHHHHHHHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EKPEVPNFRPGMRGLTLQNGMVIAIEPMVTMGTYEVDILDDQWTAVTRDGLWAAHFEHSV CCCCCCCCCCCCCCEEECCCEEEEEECEEEECEEEEEEECCCCEEEECCCEEEEECCCEE AITPSGPQILSISDRGLNRHTIEG EECCCCCEEEEEECCCCCCCCCCC >Mature Secondary Structure MKKYHGAYIKNEREIGCLREANRMVANVLDAVGDMVAPGLPTMRLEELARDMCADYKVKP CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCH AFLGYCGYPYALCCSVNEQVVHGFPSGRLLEEGDIVSVDMGVVFEGFVGDAARTFPVGKV HEEECCCCCEEEEECCCHHHHHCCCCCCEECCCCEEEEECCEEEECCCCCCHHHCCCCCC SDEARKLMRITEESLYVGIEQARAGNDVYNIGAAVQDYVEAAGFNVVRRFVGHGVGAKMH CHHHHHHHHHHHHHHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EKPEVPNFRPGMRGLTLQNGMVIAIEPMVTMGTYEVDILDDQWTAVTRDGLWAAHFEHSV CCCCCCCCCCCCCCEEECCCEEEEEECEEEECEEEEEEECCCCEEEECCCEEEEECCCEE AITPSGPQILSISDRGLNRHTIEG EECCCCCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11792842; 7559358 [H]