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The map label for this gene is yrbD [C]

Identifier: 220903811

GI number: 220903811

Start: 644734

End: 645186

Strand: Reverse

Name: yrbD [C]

Synonym: Ddes_0534

Alternate gene names: 220903811

Gene position: 645186-644734 (Counterclockwise)

Preceding gene: 220903812

Following gene: 220903810

Centisome position: 22.45

GC content: 57.62

Gene sequence:

>453_bases
ATGAGTACTGTACGCGAAACCGCTGTGGGCCTTTTTGTGCTGATTGGCCTGCTTTGTGTGGCTTATCTGACCATCAAGCT
CGGCAAGATGGAAGTTCTGTCCAACAAGGGCTACGAACTTACTGCCAATTTCGACTCTGTTTCCGGCCTGCGCGTCGGCG
CAGACGTGGAAATGTCGGGGGTGCCGGTGGGCAAGGTGATCAGCATCAGCCTGGACCCGGACCCCATGCGCAATCAGGCC
GTTGTGCGGCTGCGCCTTGACAAGGACCTGCACCTTTCGGACGACAGCATCGCCTCCATCCTGACCAGCGGCCTCATCGG
CGACAAATACGTCAGTATATCCAGGGGCGGCTCGGACCACATGCTCGCCCCCGGCGACAGCATCACGGAAACAGAATCCG
CCGTTGATCTCGGCTCTCTTATCAGTAAATACGCCTTCGGAGGAGTGAAATAG

Upstream 100 bases:

>100_bases
GCCTTGTTCCGCTGCCGGGACTTGAAACTTTGCGCCCGCCTCCATATAGTTATGAAAGAATGACTGTAGCCAGCGGCTAC
GGGGGAGTATTGCGAACCCT

Downstream 100 bases:

>100_bases
ATATGTTCACCCATGCGCTTCCGCGCCGTATCACAATTGCTCTGTGTGCCTTCCTGCTGACCCTTGTACTGCTTCCCGCC
GGGGCGCAGGCCAACTCTCC

Product: Mammalian cell entry related domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MSTVRETAVGLFVLIGLLCVAYLTIKLGKMEVLSNKGYELTANFDSVSGLRVGADVEMSGVPVGKVISISLDPDPMRNQA
VVRLRLDKDLHLSDDSIASILTSGLIGDKYVSISRGGSDHMLAPGDSITETESAVDLGSLISKYAFGGVK

Sequences:

>Translated_150_residues
MSTVRETAVGLFVLIGLLCVAYLTIKLGKMEVLSNKGYELTANFDSVSGLRVGADVEMSGVPVGKVISISLDPDPMRNQA
VVRLRLDKDLHLSDDSIASILTSGLIGDKYVSISRGGSDHMLAPGDSITETESAVDLGSLISKYAFGGVK
>Mature_149_residues
STVRETAVGLFVLIGLLCVAYLTIKLGKMEVLSNKGYELTANFDSVSGLRVGADVEMSGVPVGKVISISLDPDPMRNQAV
VRLRLDKDLHLSDDSIASILTSGLIGDKYVSISRGGSDHMLAPGDSITETESAVDLGSLISKYAFGGVK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=149, Percent_Identity=32.8859060402685, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 15818; Mature: 15687

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVRETAVGLFVLIGLLCVAYLTIKLGKMEVLSNKGYELTANFDSVSGLRVGADVEMSG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCEEECCCCEECC
VPVGKVISISLDPDPMRNQAVVRLRLDKDLHLSDDSIASILTSGLIGDKYVSISRGGSDH
CCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCC
MLAPGDSITETESAVDLGSLISKYAFGGVK
EECCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STVRETAVGLFVLIGLLCVAYLTIKLGKMEVLSNKGYELTANFDSVSGLRVGADVEMSG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCEEECCCCEECC
VPVGKVISISLDPDPMRNQAVVRLRLDKDLHLSDDSIASILTSGLIGDKYVSISRGGSDH
CCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCC
MLAPGDSITETESAVDLGSLISKYAFGGVK
EECCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]