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The map label for this gene is ytfM [H]

Identifier: 220903743

GI number: 220903743

Start: 565778

End: 567886

Strand: Reverse

Name: ytfM [H]

Synonym: Ddes_0465

Alternate gene names: 220903743

Gene position: 567886-565778 (Counterclockwise)

Preceding gene: 220903746

Following gene: 220903742

Centisome position: 19.76

GC content: 62.4

Gene sequence:

>2109_bases
ATGCTTCTTGCTAAGCCCGCACATACGGCGTATATTGCCGCCATGCGTGCTGCACCCTGCAAAAAGCCCCTGAATTTCTT
CCGCTCTGAACGCGCCGTGTTCTTTCCCCTGCCTGAGGCGAATCCGGGGGCCGGGGCATTGCGCTGCCTGTTGCTGCTGC
TTTTGACGCTGTGCCTTTGCGGTTGCGGCCTTCTGAAGCCCAAACCCGACGATGCCATGTCCGGGCAGGCGCAGGAGCAG
GAATCCCTTGAAGCCGCCTGGCGCGGTGAGCCGGTGCCGTACTCCCTGCGCATCAAGGTAGAGGATGGCCCGTCCTCCCT
TGAAGGCAAGATGAAATCCGTAAGCCAGCTGGCGCAGCTTGCCAATGAACCGCCCGACAGTACGCTTGCCCTGGAACGCC
GCGCCCGCGCCGATGTGGACACGGCCGTTCGCCTTCTGCATTCCCAGTGTTACTATGAAGGTTCGGCCTCTTTCAGCTTT
GATGAAGAAGCCAGGCCCCTGCGCGTCACGCTGACCCTTGTGGCAGGGCCGCGCTATACCCTTGGCCGGGCCGACGTAGT
CTACGAACCATCGCCGGACGTGCCGGCTCCCTTTAAAGACCGCCAGCGCGAGGTAGGCTTTTGGGGACTGCAAACCGAGC
CTGTTCCCCCACCGTCCTTTCCCCCGGTGCTGCCTGGCGTTGCCGTGGGCAAACCTGTTGTGGCAGACACCCTGCTGGAC
GCGGTGGAGGCCCTGCCGGAAAAGCTGCGCACTCAGGGTTACCCCCTGGCTGCCGTGGCCCAGGCCCGCTACACCCTTGA
TCCAGAAAAAAAGCAGGTCAATGCCGACATCAGCATCAATCCCGGCCCTCCCGCCCTTATGGGCGGCGTGGACGTGACAG
GAAACAAGGGCGTCAATGCCGCCTACCTGCAACGGCTGACCCCCTGGATTCCCGGCGATGAGCCGTGGGACACGGAACTT
ATGGACGATTACGCCAACCACCTGCGCGGGCTCGGCCTTTTCCGTTCTGTAGAAGTGCGCCCCAAGGAAGAACTGCTGGC
CGGAAAAGACGCCGCTGACAAAAGCGGCGTTCCGCTCCGCAGCAAGGACGGCCCTGCCGTGCTGCCCATTGAGGTGGCCG
TGAGCGAACTGCCCTTCCGGTCCGTGGGCGGCAGCGCGCGCTACGACACAGATACCGGCCTGGGGGTGGAAGGCTTTTGG
GAGCACCGCAATCTTTTCGGCAACGGCGAAAAACTGATGGTCAGCGCCCCTATTGCCACGCAGGTACAGGGCATCAAGGC
GGCCTTTGAAAAACCTGCTTTTCTGGTACGCGAGCAGCGTCTGCTGGCCTCCGGCTCGGCCCTGCGCGAAGATACCGAGG
CCTACAAAAGTACCTCGGCCAGCGCTTCGGCAGCGCTTGAGCGCCGCCTTTCGCGCCTGTGGTGGGGCAGCCTGGGTGCT
GGCGGACAAAGCGGTTCCATCAAGGAAAATGACAGGACCGAACAGTTTTACGCCTATGCAGGTCCCAGAGCCAGCGTACG
GCGCGACAGCCGCAACAATGTGCTCAACCCCACGCGCGGCTCTGAGATCATCCTCAAGGCCAATCCCAATACGGGCTTTT
ATGGCGAAAGTTTTACGGTCATGGCCGGTTCTCTGGAGGCCAGCGGCTACTATGCGCCCTTCCGCAAAGACGGACGCCCC
GACGACAAGCTGGTACTGGCTGGCCGGGTAGAAGCCGGGGGCATGTCCGGCGCGGCCCTGCACAATATTCCCGGCAGCCT
GCGGTACTATGCGGGTGGGGCCGGCTCTGTACGCGGCTACGCCTACCAGTCCATCGGGCCTGAAGATAAAAACGGCGACC
CCCTGGGCGGCCGGTCTTTTCAGGTCATCAACCTTGAGGCACGCTACAAGATCACCGACGACGTGGGCCTTGTTCCGTTT
CTGGACGGCGGCATGGTCTACCGGGATGAAGTTCCCCGCATTATCGGCGATATGGACTGGGGCGCGGGCCTGGGTCTGCG
TTACTACACGCCCATAGGACCCCTGCGGCTGGATGTGGGTTTTCCCCTGCAACCCAGGGATGGCGACCCGCCGGTTCAAA
TTTATGTGAGCATAGGGCAGTCTTTCTGA

Upstream 100 bases:

>100_bases
CCACAAGTAGTAGCAGGGGCTTGGCGCTTTGCCAAGCAATGGAGAATGTGCACACCGCAGCCATGTGGTTTTGCTGATAA
TACGGACAAGCATTGTGCGA

Downstream 100 bases:

>100_bases
TGACAACGCTTTCTTCCCATACCGGCCAGGGTGGCGCTGTTGTTGCCGGTGCTGCTGTTGGCGGCGCTGCGGCAGGCAGT
GCGCATGTCTCCGGCTCCGG

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 702; Mature: 702

Protein sequence:

>702_residues
MLLAKPAHTAYIAAMRAAPCKKPLNFFRSERAVFFPLPEANPGAGALRCLLLLLLTLCLCGCGLLKPKPDDAMSGQAQEQ
ESLEAAWRGEPVPYSLRIKVEDGPSSLEGKMKSVSQLAQLANEPPDSTLALERRARADVDTAVRLLHSQCYYEGSASFSF
DEEARPLRVTLTLVAGPRYTLGRADVVYEPSPDVPAPFKDRQREVGFWGLQTEPVPPPSFPPVLPGVAVGKPVVADTLLD
AVEALPEKLRTQGYPLAAVAQARYTLDPEKKQVNADISINPGPPALMGGVDVTGNKGVNAAYLQRLTPWIPGDEPWDTEL
MDDYANHLRGLGLFRSVEVRPKEELLAGKDAADKSGVPLRSKDGPAVLPIEVAVSELPFRSVGGSARYDTDTGLGVEGFW
EHRNLFGNGEKLMVSAPIATQVQGIKAAFEKPAFLVREQRLLASGSALREDTEAYKSTSASASAALERRLSRLWWGSLGA
GGQSGSIKENDRTEQFYAYAGPRASVRRDSRNNVLNPTRGSEIILKANPNTGFYGESFTVMAGSLEASGYYAPFRKDGRP
DDKLVLAGRVEAGGMSGAALHNIPGSLRYYAGGAGSVRGYAYQSIGPEDKNGDPLGGRSFQVINLEARYKITDDVGLVPF
LDGGMVYRDEVPRIIGDMDWGAGLGLRYYTPIGPLRLDVGFPLQPRDGDPPVQIYVSIGQSF

Sequences:

>Translated_702_residues
MLLAKPAHTAYIAAMRAAPCKKPLNFFRSERAVFFPLPEANPGAGALRCLLLLLLTLCLCGCGLLKPKPDDAMSGQAQEQ
ESLEAAWRGEPVPYSLRIKVEDGPSSLEGKMKSVSQLAQLANEPPDSTLALERRARADVDTAVRLLHSQCYYEGSASFSF
DEEARPLRVTLTLVAGPRYTLGRADVVYEPSPDVPAPFKDRQREVGFWGLQTEPVPPPSFPPVLPGVAVGKPVVADTLLD
AVEALPEKLRTQGYPLAAVAQARYTLDPEKKQVNADISINPGPPALMGGVDVTGNKGVNAAYLQRLTPWIPGDEPWDTEL
MDDYANHLRGLGLFRSVEVRPKEELLAGKDAADKSGVPLRSKDGPAVLPIEVAVSELPFRSVGGSARYDTDTGLGVEGFW
EHRNLFGNGEKLMVSAPIATQVQGIKAAFEKPAFLVREQRLLASGSALREDTEAYKSTSASASAALERRLSRLWWGSLGA
GGQSGSIKENDRTEQFYAYAGPRASVRRDSRNNVLNPTRGSEIILKANPNTGFYGESFTVMAGSLEASGYYAPFRKDGRP
DDKLVLAGRVEAGGMSGAALHNIPGSLRYYAGGAGSVRGYAYQSIGPEDKNGDPLGGRSFQVINLEARYKITDDVGLVPF
LDGGMVYRDEVPRIIGDMDWGAGLGLRYYTPIGPLRLDVGFPLQPRDGDPPVQIYVSIGQSF
>Mature_702_residues
MLLAKPAHTAYIAAMRAAPCKKPLNFFRSERAVFFPLPEANPGAGALRCLLLLLLTLCLCGCGLLKPKPDDAMSGQAQEQ
ESLEAAWRGEPVPYSLRIKVEDGPSSLEGKMKSVSQLAQLANEPPDSTLALERRARADVDTAVRLLHSQCYYEGSASFSF
DEEARPLRVTLTLVAGPRYTLGRADVVYEPSPDVPAPFKDRQREVGFWGLQTEPVPPPSFPPVLPGVAVGKPVVADTLLD
AVEALPEKLRTQGYPLAAVAQARYTLDPEKKQVNADISINPGPPALMGGVDVTGNKGVNAAYLQRLTPWIPGDEPWDTEL
MDDYANHLRGLGLFRSVEVRPKEELLAGKDAADKSGVPLRSKDGPAVLPIEVAVSELPFRSVGGSARYDTDTGLGVEGFW
EHRNLFGNGEKLMVSAPIATQVQGIKAAFEKPAFLVREQRLLASGSALREDTEAYKSTSASASAALERRLSRLWWGSLGA
GGQSGSIKENDRTEQFYAYAGPRASVRRDSRNNVLNPTRGSEIILKANPNTGFYGESFTVMAGSLEASGYYAPFRKDGRP
DDKLVLAGRVEAGGMSGAALHNIPGSLRYYAGGAGSVRGYAYQSIGPEDKNGDPLGGRSFQVINLEARYKITDDVGLVPF
LDGGMVYRDEVPRIIGDMDWGAGLGLRYYTPIGPLRLDVGFPLQPRDGDPPVQIYVSIGQSF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=622, Percent_Identity=24.4372990353698, Blast_Score=112, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 75778; Mature: 75778

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLAKPAHTAYIAAMRAAPCKKPLNFFRSERAVFFPLPEANPGAGALRCLLLLLLTLCLC
CCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
GCGLLKPKPDDAMSGQAQEQESLEAAWRGEPVPYSLRIKVEDGPSSLEGKMKSVSQLAQL
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
ANEPPDSTLALERRARADVDTAVRLLHSQCYYEGSASFSFDEEARPLRVTLTLVAGPRYT
HCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCEE
LGRADVVYEPSPDVPAPFKDRQREVGFWGLQTEPVPPPSFPPVLPGVAVGKPVVADTLLD
CCCCCEEECCCCCCCCCHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AVEALPEKLRTQGYPLAAVAQARYTLDPEKKQVNADISINPGPPALMGGVDVTGNKGVNA
HHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHCCCCEEECCCCCCEECCEECCCCCCCCH
AYLQRLTPWIPGDEPWDTELMDDYANHLRGLGLFRSVEVRPKEELLAGKDAADKSGVPLR
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHEEECCCCHHHHHCCCCCCCCCCCCCC
SKDGPAVLPIEVAVSELPFRSVGGSARYDTDTGLGVEGFWEHRNLFGNGEKLMVSAPIAT
CCCCCEEEEHHHHHHHCCHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCHHH
QVQGIKAAFEKPAFLVREQRLLASGSALREDTEAYKSTSASASAALERRLSRLWWGSLGA
HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
GGQSGSIKENDRTEQFYAYAGPRASVRRDSRNNVLNPTRGSEIILKANPNTGFYGESFTV
CCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEE
MAGSLEASGYYAPFRKDGRPDDKLVLAGRVEAGGMSGAALHNIPGSLRYYAGGAGSVRGY
EEECCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCEEEEECCCCCCCCE
AYQSIGPEDKNGDPLGGRSFQVINLEARYKITDDVGLVPFLDGGMVYRDEVPRIIGDMDW
EECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEECCCEEEHHHCCHHHCCCCC
GAGLGLRYYTPIGPLRLDVGFPLQPRDGDPPVQIYVSIGQSF
CCCCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MLLAKPAHTAYIAAMRAAPCKKPLNFFRSERAVFFPLPEANPGAGALRCLLLLLLTLCLC
CCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
GCGLLKPKPDDAMSGQAQEQESLEAAWRGEPVPYSLRIKVEDGPSSLEGKMKSVSQLAQL
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
ANEPPDSTLALERRARADVDTAVRLLHSQCYYEGSASFSFDEEARPLRVTLTLVAGPRYT
HCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCEE
LGRADVVYEPSPDVPAPFKDRQREVGFWGLQTEPVPPPSFPPVLPGVAVGKPVVADTLLD
CCCCCEEECCCCCCCCCHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AVEALPEKLRTQGYPLAAVAQARYTLDPEKKQVNADISINPGPPALMGGVDVTGNKGVNA
HHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHCCCCEEECCCCCCEECCEECCCCCCCCH
AYLQRLTPWIPGDEPWDTELMDDYANHLRGLGLFRSVEVRPKEELLAGKDAADKSGVPLR
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHEEECCCCHHHHHCCCCCCCCCCCCCC
SKDGPAVLPIEVAVSELPFRSVGGSARYDTDTGLGVEGFWEHRNLFGNGEKLMVSAPIAT
CCCCCEEEEHHHHHHHCCHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCHHH
QVQGIKAAFEKPAFLVREQRLLASGSALREDTEAYKSTSASASAALERRLSRLWWGSLGA
HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
GGQSGSIKENDRTEQFYAYAGPRASVRRDSRNNVLNPTRGSEIILKANPNTGFYGESFTV
CCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEE
MAGSLEASGYYAPFRKDGRPDDKLVLAGRVEAGGMSGAALHNIPGSLRYYAGGAGSVRGY
EEECCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCEEEEECCCCCCCCE
AYQSIGPEDKNGDPLGGRSFQVINLEARYKITDDVGLVPFLDGGMVYRDEVPRIIGDMDW
EECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEECCCEEEHHHCCHHHCCCCC
GAGLGLRYYTPIGPLRLDVGFPLQPRDGDPPVQIYVSIGQSF
CCCCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]