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The map label for this gene is pchR [H]

Identifier: 220903708

GI number: 220903708

Start: 522675

End: 523613

Strand: Direct

Name: pchR [H]

Synonym: Ddes_0430

Alternate gene names: 220903708

Gene position: 522675-523613 (Clockwise)

Preceding gene: 220903700

Following gene: 220903709

Centisome position: 18.19

GC content: 57.29

Gene sequence:

>939_bases
ATGAACCGTAATCCCGACATGGCGGCCTTTGCCGCTTCCAATGTGTACAAGATGACAGGAACCAGCCCTCTGGTGCTCAA
GCCGGGGCTGGCGCTGCAGTTCGCCCGTGTGCCTGCGGCTGTTCACTGCCGGACGGAATTTGCCATTGATTCTTCGCCAG
TGATCTTCGGATTTATGCTCGCCGGGCTGAATTGCTGCCGTTACGCACAGGGGGCACTCAGCCGTACCCAGTGCGTGCAC
ACGGGCGGCAGCAACCGCATCACCTACCTGCCTGAAACAAGTGGTGTGCTGGACTGCAGGGGGGGGATGCAGCGTTTGAG
CATTCTGGCCGCGCCGGAATTTCTGGAAGACTATGTGGAACTGGAGCGGTCAAAGCTGCCCAAGGGCCTGGTGGGCGCCA
TGTGCGGTAAAAGCACGGCTTTCCAGTGGGTCGGGCGGCAATGTCCCCTCAAGATGCGCCTTGTGGCAGACGTGCTGGGG
GCCGCATACGCTGGCCCGTTGCGCAGGCTGCACCTGGAAGCCCGGGCGCTTGAGCTGATCGGCCTGCAGCTTGCGGAGTA
CCTGTCGCCTGAACCTGCCGCCACGACGGCTAGGCTTACGGCTTTGGACGTGAACCGCATCAGGGATGCCAGAGAGCTGT
TGCTTCAGGATATGGAAAATCCGCCGTCCATAATGCAACTGGCGAAGCTGGCCGGGATAAATGAAAAAAAATTGAAATTT
GGCTTCAAGCAGGTTTTCGGCATGCCGGTATTTGAATATTTTAGAAATTATCGTCTTGAAATGGCCCGTGAGTTGCTGGC
ATCAGGTGTAATGAATGTCACGGAGGCGGGGATGCACATCGGGTATCAGAGCCTGAGCCATTTCAGCGAGGCTTTTCGCA
AGAAGTTCGGCGTTACGCCCAGAGAGTTTCAGGCCTCATGTAACCTTCCCCTAAAATAG

Upstream 100 bases:

>100_bases
AGTGCGGCCCGCGAGCCGCAGGCCGGGCCGGGAGGAGGAAGCATGAGCAACAATCCCCTGTGCAGCACCCAGGGTGGGCG
CCATCTTTTTACTGCATGCC

Downstream 100 bases:

>100_bases
GACCAGCGCATGGTAGAGATTTCTGGCAAACTGCCCTCAAGGAGACGGCAATGCAGAAATCTCGATTCACGGAAAGTCAG
ATCATTCGGATTCTGAAGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MNRNPDMAAFAASNVYKMTGTSPLVLKPGLALQFARVPAAVHCRTEFAIDSSPVIFGFMLAGLNCCRYAQGALSRTQCVH
TGGSNRITYLPETSGVLDCRGGMQRLSILAAPEFLEDYVELERSKLPKGLVGAMCGKSTAFQWVGRQCPLKMRLVADVLG
AAYAGPLRRLHLEARALELIGLQLAEYLSPEPAATTARLTALDVNRIRDARELLLQDMENPPSIMQLAKLAGINEKKLKF
GFKQVFGMPVFEYFRNYRLEMARELLASGVMNVTEAGMHIGYQSLSHFSEAFRKKFGVTPREFQASCNLPLK

Sequences:

>Translated_312_residues
MNRNPDMAAFAASNVYKMTGTSPLVLKPGLALQFARVPAAVHCRTEFAIDSSPVIFGFMLAGLNCCRYAQGALSRTQCVH
TGGSNRITYLPETSGVLDCRGGMQRLSILAAPEFLEDYVELERSKLPKGLVGAMCGKSTAFQWVGRQCPLKMRLVADVLG
AAYAGPLRRLHLEARALELIGLQLAEYLSPEPAATTARLTALDVNRIRDARELLLQDMENPPSIMQLAKLAGINEKKLKF
GFKQVFGMPVFEYFRNYRLEMARELLASGVMNVTEAGMHIGYQSLSHFSEAFRKKFGVTPREFQASCNLPLK
>Mature_312_residues
MNRNPDMAAFAASNVYKMTGTSPLVLKPGLALQFARVPAAVHCRTEFAIDSSPVIFGFMLAGLNCCRYAQGALSRTQCVH
TGGSNRITYLPETSGVLDCRGGMQRLSILAAPEFLEDYVELERSKLPKGLVGAMCGKSTAFQWVGRQCPLKMRLVADVLG
AAYAGPLRRLHLEARALELIGLQLAEYLSPEPAATTARLTALDVNRIRDARELLLQDMENPPSIMQLAKLAGINEKKLKF
GFKQVFGMPVFEYFRNYRLEMARELLASGVMNVTEAGMHIGYQSLSHFSEAFRKKFGVTPREFQASCNLPLK

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=80, Percent_Identity=38.75, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34430; Mature: 34430

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRNPDMAAFAASNVYKMTGTSPLVLKPGLALQFARVPAAVHCRTEFAIDSSPVIFGFML
CCCCCCHHHHHHCCEEEECCCCCEEECCCCCEEHHHCCCEEEEEEEECCCCCCHHHHHHH
AGLNCCRYAQGALSRTQCVHTGGSNRITYLPETSGVLDCRGGMQRLSILAAPEFLEDYVE
HHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEECCCHHHHHHHHHCHHHHHHHHH
LERSKLPKGLVGAMCGKSTAFQWVGRQCPLKMRLVADVLGAAYAGPLRRLHLEARALELI
HHHHHCCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLQLAEYLSPEPAATTARLTALDVNRIRDARELLLQDMENPPSIMQLAKLAGINEKKLKF
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
GFKQVFGMPVFEYFRNYRLEMARELLASGVMNVTEAGMHIGYQSLSHFSEAFRKKFGVTP
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
REFQASCNLPLK
HHHHCCCCCCCC
>Mature Secondary Structure
MNRNPDMAAFAASNVYKMTGTSPLVLKPGLALQFARVPAAVHCRTEFAIDSSPVIFGFML
CCCCCCHHHHHHCCEEEECCCCCEEECCCCCEEHHHCCCEEEEEEEECCCCCCHHHHHHH
AGLNCCRYAQGALSRTQCVHTGGSNRITYLPETSGVLDCRGGMQRLSILAAPEFLEDYVE
HHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEECCCHHHHHHHHHCHHHHHHHHH
LERSKLPKGLVGAMCGKSTAFQWVGRQCPLKMRLVADVLGAAYAGPLRRLHLEARALELI
HHHHHCCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLQLAEYLSPEPAATTARLTALDVNRIRDARELLLQDMENPPSIMQLAKLAGINEKKLKF
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
GFKQVFGMPVFEYFRNYRLEMARELLASGVMNVTEAGMHIGYQSLSHFSEAFRKKFGVTP
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
REFQASCNLPLK
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]