Click here to switch to the map view.

The map label for this gene is ssuC [H]

Identifier: 220903704

GI number: 220903704

Start: 517529

End: 518305

Strand: Reverse

Name: ssuC [H]

Synonym: Ddes_0426

Alternate gene names: 220903704

Gene position: 518305-517529 (Counterclockwise)

Preceding gene: 220903705

Following gene: 220903703

Centisome position: 18.04

GC content: 62.93

Gene sequence:

>777_bases
ATGGATAATACCCGGACGGTAAAAAGATCTGCCGCCTTTCGCTGGCGTCTGGCAGGCTGCCTGTGCTTTCTGGGCGCGTG
GCAATGGGCCTCTGTCCATGCCGGAAGCCTGGCCCTGGCATCACCTGTGGAGACGTGGCGGGCACTAATGGACATGGCCG
CGCATCCGGCCTTCTGGACACAGGGCATGCTGCCAACTCTGGGACGGGTGCTGTCCGGCTTCGGGCTGGGGCTTGTGGTG
GGAGGCGCACTGGGATGGGCCGCCGGCATCTGCCCCGCGGCCGGTTTTATGCTGCTGCCCTTCCGCTGGGTCCTGTCCAG
CGTACCCGGCGTGGTGCTGGTCATTCTGGCCATGCTCTGGTGCGGCGTCGGTTCGGCCATGATCATCCTGATTGTGGCCC
TGACCAGCATACCAACCATTTATATGGCGCTTCAGGAGGGACTGCGCGCTGTTGACCCGGCGCTGTGCGAAATGGCCCGT
GCCTACAAGATCAGCCTGCGCAAACGGTTTACAGAACTGTACCTGCCCGCGGTTGCCGCACCGCTGGTTTCGGCATGCGT
GGTAGCCCTTGGCGGCGGCATGCGCGTTGCCATTCTGGGTGAAACCCTCGGGGCCTCGCAGGGGCTGGGCTACATGCTGG
CTCTGGCAAGGGCGGACCTGGACACGCCCAAACTGTACGCCGTGGCCCTGGTCAGTATGCTGCTGGTCAGCGTCATCGAA
GCCACATTTTTGCGCTGCCTGCGTAAAAAACTGCATTGCGGAGCACGTTCTTCATGA

Upstream 100 bases:

>100_bases
AAAAAGGCCGTGTTGTTCGTGCTGCAGCAATTGCATGAACTTTCGCCGTCTTCAGTGGGCGGCGCCCTGCCTGCGGACGA
TTTCTGGGATATGGGTCACG

Downstream 100 bases:

>100_bases
ATCCTGTAGTCACACTTTACGGCGTGGGACACTGCTTCGGGGCACGCACGGTGCTGCGCGGCGTTGATTTTACCCTCATG
CCCGGCAGTTGCGCGGTGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MDNTRTVKRSAAFRWRLAGCLCFLGAWQWASVHAGSLALASPVETWRALMDMAAHPAFWTQGMLPTLGRVLSGFGLGLVV
GGALGWAAGICPAAGFMLLPFRWVLSSVPGVVLVILAMLWCGVGSAMIILIVALTSIPTIYMALQEGLRAVDPALCEMAR
AYKISLRKRFTELYLPAVAAPLVSACVVALGGGMRVAILGETLGASQGLGYMLALARADLDTPKLYAVALVSMLLVSVIE
ATFLRCLRKKLHCGARSS

Sequences:

>Translated_258_residues
MDNTRTVKRSAAFRWRLAGCLCFLGAWQWASVHAGSLALASPVETWRALMDMAAHPAFWTQGMLPTLGRVLSGFGLGLVV
GGALGWAAGICPAAGFMLLPFRWVLSSVPGVVLVILAMLWCGVGSAMIILIVALTSIPTIYMALQEGLRAVDPALCEMAR
AYKISLRKRFTELYLPAVAAPLVSACVVALGGGMRVAILGETLGASQGLGYMLALARADLDTPKLYAVALVSMLLVSVIE
ATFLRCLRKKLHCGARSS
>Mature_258_residues
MDNTRTVKRSAAFRWRLAGCLCFLGAWQWASVHAGSLALASPVETWRALMDMAAHPAFWTQGMLPTLGRVLSGFGLGLVV
GGALGWAAGICPAAGFMLLPFRWVLSSVPGVVLVILAMLWCGVGSAMIILIVALTSIPTIYMALQEGLRAVDPALCEMAR
AYKISLRKRFTELYLPAVAAPLVSACVVALGGGMRVAILGETLGASQGLGYMLALARADLDTPKLYAVALVSMLLVSVIE
ATFLRCLRKKLHCGARSS

Specific function: Part of a binding-protein-dependent transport system for aliphatic sulfonates. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=119, Percent_Identity=34.453781512605, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27380; Mature: 27380

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNTRTVKRSAAFRWRLAGCLCFLGAWQWASVHAGSLALASPVETWRALMDMAAHPAFWT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH
QGMLPTLGRVLSGFGLGLVVGGALGWAAGICPAAGFMLLPFRWVLSSVPGVVLVILAMLW
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
CGVGSAMIILIVALTSIPTIYMALQEGLRAVDPALCEMARAYKISLRKRFTELYLPAVAA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLVSACVVALGGGMRVAILGETLGASQGLGYMLALARADLDTPKLYAVALVSMLLVSVIE
HHHHHHHHHHCCCCEEEEECCHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
ATFLRCLRKKLHCGARSS
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDNTRTVKRSAAFRWRLAGCLCFLGAWQWASVHAGSLALASPVETWRALMDMAAHPAFWT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH
QGMLPTLGRVLSGFGLGLVVGGALGWAAGICPAAGFMLLPFRWVLSSVPGVVLVILAMLW
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
CGVGSAMIILIVALTSIPTIYMALQEGLRAVDPALCEMARAYKISLRKRFTELYLPAVAA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLVSACVVALGGGMRVAILGETLGASQGLGYMLALARADLDTPKLYAVALVSMLLVSVIE
HHHHHHHHHHCCCCEEEEECCHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
ATFLRCLRKKLHCGARSS
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8011666; 9782504; 9384377 [H]