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The map label for this gene is yeaM [H]

Identifier: 220903693

GI number: 220903693

Start: 506470

End: 507279

Strand: Reverse

Name: yeaM [H]

Synonym: Ddes_0415

Alternate gene names: 220903693

Gene position: 507279-506470 (Counterclockwise)

Preceding gene: 220903695

Following gene: 220903692

Centisome position: 17.65

GC content: 59.01

Gene sequence:

>810_bases
ATGTCACTAAAAGAATTATTGGCAGCTTTTTCGCCCGACCAGTGGGATATTCCGGTTACAGCCAGAAAAGTGGATGTCGT
CCGGAATGAATACGAAATGCCCACGCACCAGCACACGGCCGGACAGTTGCTGCTCACGCTGCGCGGCAGCACGGCATGCA
GGGTTTTTGAGGACCTTTGGCTGGTTCCGCCGCAGTGCGCTGTATGGGTTCCGCCCAACACTCCCCACTGCAACCGGATA
ACAGCGCGATCCAGCGTATGCCTGCTTTTTATTCGCCAGGAGCACATCCGGCTGCTTCCTGCCACATGCTGCACCCTGTC
CATATCACCGCTGGTGCGTGAACTGATCAGGCATGTTGCCGCACTGCCGCCCGAGGACATGCTCGCAGAGCGTGGCGAAC
GCCTTATCCAGGTGCTGCTTGACGAACTGTCACGCATGCCTGCAACCGGCCTGCGCCTGCCGGTATCGTCAGACATACGT
TTGCAGTCCATTGCAGAAAGCATCACCGAGGCCCCGGCGGAACGGAAAGACCTTTCCGCCTGGGCCAGACACATCGGCAT
GAGCCGCCGCTCTCTGGCGCGGCTGGTGGTCAGGGAGACGGGCCTGTCTTTCGGGCGCTGGCGGCAGCAACTTCTTCTGG
TTATGGCCATCCAGATGTTGTCGGACGGCATCAGCGTACAGCAGACCGCCTGGGACCTTGGCTATGAATCCGTCACGGCC
TTTATCACCATGTTCAAAAAAGCGTTGGGCGCCTCGCCGGCCAAGTATGTTCAAAGGTACTTCGCCACCGGGACTGAATC
CGGAAGCTGA

Upstream 100 bases:

>100_bases
ATTACTGACCTTGATACTCAGGATCAGAGGGCCACTATGCCATTTTTCTTTTTGATTTAATTTAGCGATTATGCCAAACA
ATATCTAAATGAGGCCATAA

Downstream 100 bases:

>100_bases
AAATATTCAGACGCTATCCCGCGCTGCGGCAATGCCTGGACACTACCGCCAGACTGCCCGGAAAAAGCACTCCCCCGGCA
CTGCGTCTGCCCCATTCCTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSLKELLAAFSPDQWDIPVTARKVDVVRNEYEMPTHQHTAGQLLLTLRGSTACRVFEDLWLVPPQCAVWVPPNTPHCNRI
TARSSVCLLFIRQEHIRLLPATCCTLSISPLVRELIRHVAALPPEDMLAERGERLIQVLLDELSRMPATGLRLPVSSDIR
LQSIAESITEAPAERKDLSAWARHIGMSRRSLARLVVRETGLSFGRWRQQLLLVMAIQMLSDGISVQQTAWDLGYESVTA
FITMFKKALGASPAKYVQRYFATGTESGS

Sequences:

>Translated_269_residues
MSLKELLAAFSPDQWDIPVTARKVDVVRNEYEMPTHQHTAGQLLLTLRGSTACRVFEDLWLVPPQCAVWVPPNTPHCNRI
TARSSVCLLFIRQEHIRLLPATCCTLSISPLVRELIRHVAALPPEDMLAERGERLIQVLLDELSRMPATGLRLPVSSDIR
LQSIAESITEAPAERKDLSAWARHIGMSRRSLARLVVRETGLSFGRWRQQLLLVMAIQMLSDGISVQQTAWDLGYESVTA
FITMFKKALGASPAKYVQRYFATGTESGS
>Mature_268_residues
SLKELLAAFSPDQWDIPVTARKVDVVRNEYEMPTHQHTAGQLLLTLRGSTACRVFEDLWLVPPQCAVWVPPNTPHCNRIT
ARSSVCLLFIRQEHIRLLPATCCTLSISPLVRELIRHVAALPPEDMLAERGERLIQVLLDELSRMPATGLRLPVSSDIRL
QSIAESITEAPAERKDLSAWARHIGMSRRSLARLVVRETGLSFGRWRQQLLLVMAIQMLSDGISVQQTAWDLGYESVTAF
ITMFKKALGASPAKYVQRYFATGTESGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=253, Percent_Identity=46.6403162055336, Blast_Score=218, Evalue=3e-58,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30130; Mature: 29999

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKELLAAFSPDQWDIPVTARKVDVVRNEYEMPTHQHTAGQLLLTLRGSTACRVFEDLW
CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCHHHHHHHHHH
LVPPQCAVWVPPNTPHCNRITARSSVCLLFIRQEHIRLLPATCCTLSISPLVRELIRHVA
CCCCCCEEECCCCCCCCCCEECCCHHHHEEEHHHHHHHHHHHHHHEEHHHHHHHHHHHHH
ALPPEDMLAERGERLIQVLLDELSRMPATGLRLPVSSDIRLQSIAESITEAPAERKDLSA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
WARHIGMSRRSLARLVVRETGLSFGRWRQQLLLVMAIQMLSDGISVQQTAWDLGYESVTA
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
FITMFKKALGASPAKYVQRYFATGTESGS
HHHHHHHHHCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLKELLAAFSPDQWDIPVTARKVDVVRNEYEMPTHQHTAGQLLLTLRGSTACRVFEDLW
CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCHHHHHHHHHH
LVPPQCAVWVPPNTPHCNRITARSSVCLLFIRQEHIRLLPATCCTLSISPLVRELIRHVA
CCCCCCEEECCCCCCCCCCEECCCHHHHEEEHHHHHHHHHHHHHHEEHHHHHHHHHHHHH
ALPPEDMLAERGERLIQVLLDELSRMPATGLRLPVSSDIRLQSIAESITEAPAERKDLSA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
WARHIGMSRRSLARLVVRETGLSFGRWRQQLLLVMAIQMLSDGISVQQTAWDLGYESVTA
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
FITMFKKALGASPAKYVQRYFATGTESGS
HHHHHHHHHCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]