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The map label for this gene is dcyD [H]

Identifier: 220903619

GI number: 220903619

Start: 413018

End: 414019

Strand: Direct

Name: dcyD [H]

Synonym: Ddes_0339

Alternate gene names: 220903619

Gene position: 413018-414019 (Clockwise)

Preceding gene: 220903613

Following gene: 220903620

Centisome position: 14.37

GC content: 59.68

Gene sequence:

>1002_bases
ATGAATCTCAGCAAATTTCCGCGCAGAGGATATGTGAAGGAGGCCACGCCTCTGGAATTTCTGCCGGCCTTCAGCAAGGC
CCTTGGCGGCAAGGTCAATGTGTGGATCAAGCGCGACGACCTGTTGCCCGGCACCAGCGGCGGCAACAAGACCCGCAAGC
TTGACTTCGCCATTGCCGATGCGCTGGCTAAAGGGGCGGATACCATCATTACCTGCGGGGCCGTGCAGTCCAACCACTGC
CGCCTTACGCTGGCCTGGTCGGTGAAAGAGGGGCTGGACTGCCATCTGATTCTTGAAGAGCGCGTTGCCGGCAGCTATAA
CCCCGATGCCTCGGGCAACAACTTTCTTTTCCGCCTTCTGGGCGTCAAGAGCACCACAGTGGTGCCCGGCGGCAGCCCCA
TGATGCAGGAAATGGAAAAACTGGCTGAAAAACTGCGGGCCGAAGGGCGCAAGCCGTACATTATCCCCGGCGGCGCTTCC
AACGCCATCGGTGCGCTGGGCTATGTGCAGTGCACGCAGGAGATCATGCAGCAGATGTTTGACCGCGGCCTTGACTTTGA
CCACATGGTCGTACCCAGCGGCAGCGCAGGAACCCATGCGGGCGTACTGCTGGGCATGCTTGGCTGCAATATGAACATCC
CCGTGACGGGCATCGGCGTGAACCGCAAAAAGCCCGTACAGGAAGAAGCCGTGTACTCGCTCATGCAGGAAACTGCGGGC
CTTCTGGGCGTTCCTACGCCCTTGCCGAGAGAAGCAGTGGTGGCTTACGATGACTACGTGGGTCCCGGCTATTCGTTGCC
CACAACCGCCATGGTGGAGGCGGTGCGCCTGCTCGCCTCTACAGAAAGCATTCTTCTTGACCCGGTGTATTCCGGCAAGG
CCATGTCGGGCCTGATCGACCTTGTGCGGAAGGGACATTTTGCCGCAGGCTCCAATGTGCTTTTCCTGCATACGGGTGGT
TCTCCCGCCCTGTACGCCTATCTTGACGAGTTCCGCCAATAG

Upstream 100 bases:

>100_bases
TGCGATCGCGTTCGCCATGGCCGAACTCACGCTGCCGGTCACGGCATCGGACAGGACGGACGCGCGGCATTTTGATGAAC
CCCAGCATCAGGAGGCAAAC

Downstream 100 bases:

>100_bases
TCGGCGCGGGCCGCGTGGGCTGACCACGCGGCCCGTACGTTATATTTCCCCGACGGGAGAGGAAGAGAACCATGCAGAAT
GACAAGTTGAAAATGTACGG

Product: D-cysteine desulfhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MNLSKFPRRGYVKEATPLEFLPAFSKALGGKVNVWIKRDDLLPGTSGGNKTRKLDFAIADALAKGADTIITCGAVQSNHC
RLTLAWSVKEGLDCHLILEERVAGSYNPDASGNNFLFRLLGVKSTTVVPGGSPMMQEMEKLAEKLRAEGRKPYIIPGGAS
NAIGALGYVQCTQEIMQQMFDRGLDFDHMVVPSGSAGTHAGVLLGMLGCNMNIPVTGIGVNRKKPVQEEAVYSLMQETAG
LLGVPTPLPREAVVAYDDYVGPGYSLPTTAMVEAVRLLASTESILLDPVYSGKAMSGLIDLVRKGHFAAGSNVLFLHTGG
SPALYAYLDEFRQ

Sequences:

>Translated_333_residues
MNLSKFPRRGYVKEATPLEFLPAFSKALGGKVNVWIKRDDLLPGTSGGNKTRKLDFAIADALAKGADTIITCGAVQSNHC
RLTLAWSVKEGLDCHLILEERVAGSYNPDASGNNFLFRLLGVKSTTVVPGGSPMMQEMEKLAEKLRAEGRKPYIIPGGAS
NAIGALGYVQCTQEIMQQMFDRGLDFDHMVVPSGSAGTHAGVLLGMLGCNMNIPVTGIGVNRKKPVQEEAVYSLMQETAG
LLGVPTPLPREAVVAYDDYVGPGYSLPTTAMVEAVRLLASTESILLDPVYSGKAMSGLIDLVRKGHFAAGSNVLFLHTGG
SPALYAYLDEFRQ
>Mature_333_residues
MNLSKFPRRGYVKEATPLEFLPAFSKALGGKVNVWIKRDDLLPGTSGGNKTRKLDFAIADALAKGADTIITCGAVQSNHC
RLTLAWSVKEGLDCHLILEERVAGSYNPDASGNNFLFRLLGVKSTTVVPGGSPMMQEMEKLAEKLRAEGRKPYIIPGGAS
NAIGALGYVQCTQEIMQQMFDRGLDFDHMVVPSGSAGTHAGVLLGMLGCNMNIPVTGIGVNRKKPVQEEAVYSLMQETAG
LLGVPTPLPREAVVAYDDYVGPGYSLPTTAMVEAVRLLASTESILLDPVYSGKAMSGLIDLVRKGHFAAGSNVLFLHTGG
SPALYAYLDEFRQ

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=327, Percent_Identity=44.6483180428135, Blast_Score=254, Evalue=6e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 35652; Mature: 35652

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSKFPRRGYVKEATPLEFLPAFSKALGGKVNVWIKRDDLLPGTSGGNKTRKLDFAIAD
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEHHHHHH
ALAKGADTIITCGAVQSNHCRLTLAWSVKEGLDCHLILEERVAGSYNPDASGNNFLFRLL
HHHCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEHHHCCCCCCCCCCCCEEEEEE
GVKSTTVVPGGSPMMQEMEKLAEKLRAEGRKPYIIPGGASNAIGALGYVQCTQEIMQQMF
CCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
DRGLDFDHMVVPSGSAGTHAGVLLGMLGCNMNIPVTGIGVNRKKPVQEEAVYSLMQETAG
HCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
LLGVPTPLPREAVVAYDDYVGPGYSLPTTAMVEAVRLLASTESILLDPVYSGKAMSGLID
CCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LVRKGHFAAGSNVLFLHTGGSPALYAYLDEFRQ
HHHCCCCCCCCCEEEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MNLSKFPRRGYVKEATPLEFLPAFSKALGGKVNVWIKRDDLLPGTSGGNKTRKLDFAIAD
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEHHHHHH
ALAKGADTIITCGAVQSNHCRLTLAWSVKEGLDCHLILEERVAGSYNPDASGNNFLFRLL
HHHCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEHHHCCCCCCCCCCCCEEEEEE
GVKSTTVVPGGSPMMQEMEKLAEKLRAEGRKPYIIPGGASNAIGALGYVQCTQEIMQQMF
CCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
DRGLDFDHMVVPSGSAGTHAGVLLGMLGCNMNIPVTGIGVNRKKPVQEEAVYSLMQETAG
HCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
LLGVPTPLPREAVVAYDDYVGPGYSLPTTAMVEAVRLLASTESILLDPVYSGKAMSGLID
CCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LVRKGHFAAGSNVLFLHTGGSPALYAYLDEFRQ
HHHCCCCCCCCCEEEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA