Definition Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome.
Accession NC_011883
Length 2,873,437

Click here to switch to the map view.

The map label for this gene is 220903534

Identifier: 220903534

GI number: 220903534

Start: 296460

End: 298313

Strand: Direct

Name: 220903534

Synonym: Ddes_0253

Alternate gene names: NA

Gene position: 296460-298313 (Clockwise)

Preceding gene: 220903533

Following gene: 220903535

Centisome position: 10.32

GC content: 55.83

Gene sequence:

>1854_bases
ATGGCCACAAAGCTGGAAAAACTCTTTTTCGCCATCGGCGTGCAAGATGGCGCTTCAAGCAAGATAGCCAAGCTGCAGGC
CAATATCTCAACACTGGCTGACAGGGCTAAAGGCGCATTCATTGGCATGGGGTCTGCCGCTATGGGCTTGGCGGGAACGG
CGCTCTCAATCAAAGCCCTTGCCGGGCCAGCGATTGAACTCAATCACGCCCTGGGCGAAGTGGAAGCCCTGGGCGTTGAT
TCCAAAGGGCTCAAGATTCTGCAAACCGAGGCCGGGCGCTTTGCCATGCAATACGGCAAAAGCGCTACAGATGTAATAAA
ATCGTCAACGGCCATTCAAGAGCAGGTCGACGGACTTACCGCCAAGGAGCTCGCAACGTTTACCACTGCCAGCAATGTGC
TTGCTATGGCCAGCCGTTCCAGCGTGGACAGTATGACAGGGTATGTATCCAAGATGCATGGTCTGTTCGAGACTCAGGCT
GGCAATATGGGGCAGGCCCGCTGGGCTGAACAGATGGTCGGGCAAACCGCTTTCGTAACCAAGGCTTTCAAGGCCAAAGG
GGAAGAAATTTCTGCAGGCTTTGACGCCCTGGGCAACAGGGCTGTCCGGGCGGGGATATCCGCGGGCGAACAAATGGCGG
TCATTGCCGCTGCCCAGCGAGACATGGGCGGCACGGCAGCAGGGGAGCAGTACAAGCTGCTGGTCGACAAGGCACGCACG
GCAGGGCGCGCCCTGGGCGTGTCGTTCACCGACCAGCAGGGGCACATGCTCTCAATGGTTGATATTCTTGAACGTGTGCG
GGCCAAATATGGCGACACCCTCACCACTGCGCAGCAGGCCAGCCTTGGCAAGGCTCTGGGCGATGAAAAGGCGGGGGCCT
TCCTCAACACCCTGCTGTCCAAACAAGGCGAGCTCACCCGGGTTATCAAGGACGTTTCCACAGTTACAAACATGGACGGC
GCCAGGGCATCGGCCCGACAGACAACAGATGCATTCCAACGGTTCGGCGCGTCCTTGGACTATGTGAAGACTAACTTCAT
GCAAAAGCTGCTGCCCACCCTTGAGCGATGGACGCATAAAGCCAGTGACCACCTGGACACCATCAACAAGTGGATCACCA
AGTATCCCAACGTGGCCCGCGTGATTGGCTATGTGGTGCTTGCCCTGCTGTCACTGGCTGCGGTTGTGGCTGTTGGCACT
ATGGCCTTCAATCTGTTCAAGCTCGCAAGTATGCCTGTTGTTGGGGCAATCAAGGGCATCACATCCGTATTCAAATTGCT
GACGGTGGCCATACGGGCCAACCCCATCGGCTTCCTTATCTGGGCGCTGATTATGTGCGTGATGTATTGGGATGAAGTTT
CGGCGAGTATTGGAAAAGTGTGGGGGCTGTTACGCGGTTTCTTTGAATCCCTGGGGCCCATCGGCGCACCCTTTGTGCTG
CTAATGGATACGCTGGCCGAGCGGTGGCGATTGTTTACCGACCTTTTTAAGGATTTTTCATGGACAAAGCTGTTGCGGTT
CGCCATTGCCTCAGTCCTCACGCCTCTTGAGTTCTTTATAAATGCTATCGGCAAGCTGCTCTCGCACGTGCCCGGCATGA
GTGAGAAGGCTGAAAAGCTTATGAACTGGAAGGCCGCAAATCTTGTCGATATGCCGTCAACCCCGGAAGATTTGGAAGTA
GAAAGCCTCAAGCAGTCAAAAACCCTGCAGGTGCAGCAAGGGGGCGTCATGCCGTCTGGCGGCAGCTCGTCAACCATGAA
CAACAATGGCCGCAGCGTAACCATTGGCGAGCAGCACATACACGTCGAAAACGCCACCGATATGAATGATTTTTGGACGA
TGGGGCTTGGGTAA

Upstream 100 bases:

>100_bases
ATTGCATGGCCGAAGCCGTTTTTCTAGAGCGCGATTATTGGGAAAAAATGAATATCGCCGTAGCCAACGGCATAGCTAAA
GCCTTTAACCCCTGAAAACT

Downstream 100 bases:

>100_bases
TGGCAGAATCCATGTACCGCGACCTGCTTATCGTTGACGACGACATATCCCTCGACGGCGGAGGGTATCCGGTCCTTGTC
ACAGATCGTCCCTGCATCGC

Product: phage tail tape measure protein, TP901 family

Products: NA

Alternate protein names: Phage Tail Tape Measure Protein Core Region; Tail Tape Measure Protein; Tail Length Determinator; Phage Tail Length Determinator; Tail Tape Measure Protein Bacteriophage Origin; Phage-Related Tail Protein; Phage Tail Tape Measure Core Region; Prophage; Phage-Like Protein; Phage Gene; Phage Tail Tape Measure Family Protein; Phage Tail Tape Measure Protein Family; Phage Tail Protein; Phage Tail Tape Measure Protein Core Region

Number of amino acids: Translated: 617; Mature: 616

Protein sequence:

>617_residues
MATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKALAGPAIELNHALGEVEALGVD
SKGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLTAKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQA
GNMGQARWAEQMVGQTAFVTKAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKART
AGRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLSKQGELTRVIKDVSTVTNMDG
ARASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHKASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGT
MAFNLFKLASMPVVGAIKGITSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVL
LMDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKLMNWKAANLVDMPSTPEDLEV
ESLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHIHVENATDMNDFWTMGLG

Sequences:

>Translated_617_residues
MATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKALAGPAIELNHALGEVEALGVD
SKGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLTAKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQA
GNMGQARWAEQMVGQTAFVTKAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKART
AGRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLSKQGELTRVIKDVSTVTNMDG
ARASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHKASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGT
MAFNLFKLASMPVVGAIKGITSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVL
LMDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKLMNWKAANLVDMPSTPEDLEV
ESLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHIHVENATDMNDFWTMGLG
>Mature_616_residues
ATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKALAGPAIELNHALGEVEALGVDS
KGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLTAKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQAG
NMGQARWAEQMVGQTAFVTKAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKARTA
GRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLSKQGELTRVIKDVSTVTNMDGA
RASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHKASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGTM
AFNLFKLASMPVVGAIKGITSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVLL
MDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKLMNWKAANLVDMPSTPEDLEVE
SLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHIHVENATDMNDFWTMGLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66102; Mature: 65971

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKAL
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHCCHHHHHHHH
AGPAIELNHALGEVEALGVDSKGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLT
CCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCH
AKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQAGNMGQARWAEQMVGQTAFVT
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHH
KAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKART
HHHHHCCCHHHCCHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
AGRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLS
CCHHCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQGELTRVIKDVSTVTNMDGARASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHK
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGTMAFNLFKLASMPVVGAIKGI
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
TSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LMDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
MNWKAANLVDMPSTPEDLEVESLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHI
HCCHHCCEECCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCEE
HVENATDMNDFWTMGLG
EECCCCCCHHHHCCCCC
>Mature Secondary Structure 
ATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKAL
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHCCHHHHHHHH
AGPAIELNHALGEVEALGVDSKGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLT
CCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCH
AKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQAGNMGQARWAEQMVGQTAFVT
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHH
KAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKART
HHHHHCCCHHHCCHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
AGRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLS
CCHHCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQGELTRVIKDVSTVTNMDGARASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHK
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGTMAFNLFKLASMPVVGAIKGI
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
TSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LMDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
MNWKAANLVDMPSTPEDLEVESLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHI
HCCHHCCEECCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCEE
HVENATDMNDFWTMGLG
EECCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA