Click here to switch to the map view.

The map label for this gene is ygeV [H]

Identifier: 220903500

GI number: 220903500

Start: 271014

End: 272831

Strand: Reverse

Name: ygeV [H]

Synonym: Ddes_0219

Alternate gene names: 220903500

Gene position: 272831-271014 (Counterclockwise)

Preceding gene: 220903503

Following gene: 220903492

Centisome position: 9.49

GC content: 54.18

Gene sequence:

>1818_bases
ATGAACAAACGCATATATGACATAATATATCTGCTTAATCTGATACCTTCCAGCAGCTGTGCTCTTGTTTGCAGTGATGA
ACAATGGAATATTGAGGCATGTAGTCATTCGTTTCATTTACTTACGCAGAAAATCAACAATAGCTTATCAGGCAATAAAG
AAATCGATCCCTCCACACAAGATAATAATCATTCTTTTTTAAGAACACTTGAGCTATATTGCAGCCACGAATTGTCCAAA
AAGGTGCAAGCAAGTAAACCGGATGTTCCCACGGACATCAGCCTGCCCTGCGGCAAATGGACGCTCTGCTGGAAATGGCT
GAACAGCGAAGATTCCCGCCCCGGAAAAAACAGGCGCAGGTTCGTTCTGCTGCATGAAAACCACGCGGCGGACAACCAGC
CCGACGTGCACCTCCTGTATCAGGAACTGCACGCCATCATGGACTCCATGTATGACGGCATGTGGATTATTGACAGCAAC
GGCACCACCCTGCACGTCAACAAGGCCATGAAGCGCATCGCCAATATTGAACCTGAAGAGATGATCGGCAAATCTGTCAC
CATTCCGGTGCTGGAAGGCAAATTTTCTGCAGCGGTAACACTGGAAGCCCTTGAACAAAGAAAGATCGTCACCAGATTCG
ACGACTACCCCAATGGAATCCGCTGTCTCAATACAAGCACACCCATCTTTGACAAGCAGGGCAATATCTGGCGCGTGGTA
GCCTGTATCCGCGATCTCACCGAGCTTGAAACCCTGCAACGGCGGCTGGCAGATGCCGAGCGCACCGCTTTTTTGCGTCA
GGCCGAAGCGGCAGCCGTGCAACACAGCAATGAAAAAAAACTCGTTGCTACGGGCAAGGTTATGCGCCGCTGCGTGTCTG
AGCTTGAAAAAGCGGCCCGTGCGCCCTCCGGCATTCTCATTCTTGGCGAAACCGGCACAGGAAAAACCTATGCCGCTTCC
TACATACACCAGAAAAGCCCACGGGCCGACGGCCCTTTCATTTCTGTCAACTGCGCGGCCATCCCCCCGACGCTTATTGA
ATCGGAACTGTTCGGCTATGAAAAAGGGGCCTTTACCGGGGCCAGCCGTTCGGGCAAAAAGGGCTATTTCGGGCTGGCCG
ACAAGGGCACCCTGCTGTTGGACGAAATAGGCGAACTGCCCCTGAGCATGCAGGCAAAAATCCTGCACGTGCTTGACGGG
CAGGGGTTTCGCAAGATCGGCGGCGAAAAGGAACTGCGCGTGGATGTGCGCATCATCGCGGCCACCAACAGGCCGCTGGA
CCAGCTTGTAAACAGCGGCCTGTTCAGGGCTGACCTGTATTACCGCCTGCGTGTGCTGAGTATAAACATGCCGCCCCTGC
GGGAACACCCCGAAGACATACCGGCCCTCATGATGGTTTTTCTGGACAAAGCCTGCACCCGCTACAACACCATAAAAACA
TTTTCACCCAGCGTTATTGACTGCTTCAGCAAGCACTCCTGGCCGGGCAATGTGCGCGAGCTGCGCGCAGCGGTGGACTT
TCTGGCCGCCATGACCGAAAGCAGCGTCATATCCATGCGCGACCTGCCCGCCTACCTGCTCGGTGATCTGCCCGGCATCT
GCGAAGACGAAGAGGATGAGTCCCTGCCCGGGCAGGCCGATTCAAACCTTTCTTTCAGGGAAGCCGTTGAAAATCTGGAA
CGCTCCCTCATCAGCGAAGCCCTGGCGGCTACGGGCAGCACCTACAAGGCGGCTGCCAGGCTTGGCATCAGCCAGTCCAC
AGTGGTCCGCAAGGCCAAGCAGCTGCGCATTCCCGTCACAGAGAAAAAAAGAAACTGA

Upstream 100 bases:

>100_bases
CCCCCGGCATAATGGTAATGCAATATCGCCTTATTAAGCATACCACCATCCTGACGTGATGCAGCATCGCATCATCTGCG
GAAAAATGGAAAGGGCGCAT

Downstream 100 bases:

>100_bases
CCCCACAAAATACAGGGACCGCCCAGAATCTTGTCTGAAGCGGTCCCTGATGGTTTGCCCGGCCGTCCTCTTCGGGTTGC
CCAGTACCGACCGGCAAGGC

Product: Fis family PAS modulated sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 605; Mature: 605

Protein sequence:

>605_residues
MNKRIYDIIYLLNLIPSSSCALVCSDEQWNIEACSHSFHLLTQKINNSLSGNKEIDPSTQDNNHSFLRTLELYCSHELSK
KVQASKPDVPTDISLPCGKWTLCWKWLNSEDSRPGKNRRRFVLLHENHAADNQPDVHLLYQELHAIMDSMYDGMWIIDSN
GTTLHVNKAMKRIANIEPEEMIGKSVTIPVLEGKFSAAVTLEALEQRKIVTRFDDYPNGIRCLNTSTPIFDKQGNIWRVV
ACIRDLTELETLQRRLADAERTAFLRQAEAAAVQHSNEKKLVATGKVMRRCVSELEKAARAPSGILILGETGTGKTYAAS
YIHQKSPRADGPFISVNCAAIPPTLIESELFGYEKGAFTGASRSGKKGYFGLADKGTLLLDEIGELPLSMQAKILHVLDG
QGFRKIGGEKELRVDVRIIAATNRPLDQLVNSGLFRADLYYRLRVLSINMPPLREHPEDIPALMMVFLDKACTRYNTIKT
FSPSVIDCFSKHSWPGNVRELRAAVDFLAAMTESSVISMRDLPAYLLGDLPGICEDEEDESLPGQADSNLSFREAVENLE
RSLISEALAATGSTYKAAARLGISQSTVVRKAKQLRIPVTEKKRN

Sequences:

>Translated_605_residues
MNKRIYDIIYLLNLIPSSSCALVCSDEQWNIEACSHSFHLLTQKINNSLSGNKEIDPSTQDNNHSFLRTLELYCSHELSK
KVQASKPDVPTDISLPCGKWTLCWKWLNSEDSRPGKNRRRFVLLHENHAADNQPDVHLLYQELHAIMDSMYDGMWIIDSN
GTTLHVNKAMKRIANIEPEEMIGKSVTIPVLEGKFSAAVTLEALEQRKIVTRFDDYPNGIRCLNTSTPIFDKQGNIWRVV
ACIRDLTELETLQRRLADAERTAFLRQAEAAAVQHSNEKKLVATGKVMRRCVSELEKAARAPSGILILGETGTGKTYAAS
YIHQKSPRADGPFISVNCAAIPPTLIESELFGYEKGAFTGASRSGKKGYFGLADKGTLLLDEIGELPLSMQAKILHVLDG
QGFRKIGGEKELRVDVRIIAATNRPLDQLVNSGLFRADLYYRLRVLSINMPPLREHPEDIPALMMVFLDKACTRYNTIKT
FSPSVIDCFSKHSWPGNVRELRAAVDFLAAMTESSVISMRDLPAYLLGDLPGICEDEEDESLPGQADSNLSFREAVENLE
RSLISEALAATGSTYKAAARLGISQSTVVRKAKQLRIPVTEKKRN
>Mature_605_residues
MNKRIYDIIYLLNLIPSSSCALVCSDEQWNIEACSHSFHLLTQKINNSLSGNKEIDPSTQDNNHSFLRTLELYCSHELSK
KVQASKPDVPTDISLPCGKWTLCWKWLNSEDSRPGKNRRRFVLLHENHAADNQPDVHLLYQELHAIMDSMYDGMWIIDSN
GTTLHVNKAMKRIANIEPEEMIGKSVTIPVLEGKFSAAVTLEALEQRKIVTRFDDYPNGIRCLNTSTPIFDKQGNIWRVV
ACIRDLTELETLQRRLADAERTAFLRQAEAAAVQHSNEKKLVATGKVMRRCVSELEKAARAPSGILILGETGTGKTYAAS
YIHQKSPRADGPFISVNCAAIPPTLIESELFGYEKGAFTGASRSGKKGYFGLADKGTLLLDEIGELPLSMQAKILHVLDG
QGFRKIGGEKELRVDVRIIAATNRPLDQLVNSGLFRADLYYRLRVLSINMPPLREHPEDIPALMMVFLDKACTRYNTIKT
FSPSVIDCFSKHSWPGNVRELRAAVDFLAAMTESSVISMRDLPAYLLGDLPGICEDEEDESLPGQADSNLSFREAVENLE
RSLISEALAATGSTYKAAARLGISQSTVVRKAKQLRIPVTEKKRN

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=322, Percent_Identity=41.9254658385093, Blast_Score=247, Evalue=2e-66,
Organism=Escherichia coli, GI1788550, Length=303, Percent_Identity=42.9042904290429, Blast_Score=231, Evalue=8e-62,
Organism=Escherichia coli, GI1790299, Length=329, Percent_Identity=41.3373860182371, Blast_Score=224, Evalue=2e-59,
Organism=Escherichia coli, GI1789087, Length=351, Percent_Identity=38.1766381766382, Blast_Score=221, Evalue=2e-58,
Organism=Escherichia coli, GI87082117, Length=324, Percent_Identity=38.8888888888889, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI1790437, Length=326, Percent_Identity=39.2638036809816, Blast_Score=212, Evalue=4e-56,
Organism=Escherichia coli, GI1787583, Length=331, Percent_Identity=36.8580060422961, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1788905, Length=303, Percent_Identity=38.6138613861386, Blast_Score=201, Evalue=2e-52,
Organism=Escherichia coli, GI87082152, Length=320, Percent_Identity=40, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI1786524, Length=311, Percent_Identity=38.2636655948553, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI87081872, Length=204, Percent_Identity=43.1372549019608, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI87081858, Length=467, Percent_Identity=26.9807280513919, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1789828, Length=242, Percent_Identity=35.9504132231405, Blast_Score=135, Evalue=7e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 67479; Mature: 67479

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRIYDIIYLLNLIPSSSCALVCSDEQWNIEACSHSFHLLTQKINNSLSGNKEIDPSTQ
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DNNHSFLRTLELYCSHELSKKVQASKPDVPTDISLPCGKWTLCWKWLNSEDSRPGKNRRR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCE
FVLLHENHAADNQPDVHLLYQELHAIMDSMYDGMWIIDSNGTTLHVNKAMKRIANIEPEE
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEHHHHHHHHHCCCHHH
MIGKSVTIPVLEGKFSAAVTLEALEQRKIVTRFDDYPNGIRCLNTSTPIFDKQGNIWRVV
HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHH
ACIRDLTELETLQRRLADAERTAFLRQAEAAAVQHSNEKKLVATGKVMRRCVSELEKAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHC
APSGILILGETGTGKTYAASYIHQKSPRADGPFISVNCAAIPPTLIESELFGYEKGAFTG
CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCC
ASRSGKKGYFGLADKGTLLLDEIGELPLSMQAKILHVLDGQGFRKIGGEKELRVDVRIIA
CCCCCCCCEEECCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCHHHCCCCCEEEEEEEEEE
ATNRPLDQLVNSGLFRADLYYRLRVLSINMPPLREHPEDIPALMMVFLDKACTRYNTIKT
ECCCCHHHHHCCCCEEEEHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
FSPSVIDCFSKHSWPGNVRELRAAVDFLAAMTESSVISMRDLPAYLLGDLPGICEDEEDE
CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEHHCCCHHHHCCCCCCCCCCCCC
SLPGQADSNLSFREAVENLERSLISEALAATGSTYKAAARLGISQSTVVRKAKQLRIPVT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCH
EKKRN
HCCCC
>Mature Secondary Structure
MNKRIYDIIYLLNLIPSSSCALVCSDEQWNIEACSHSFHLLTQKINNSLSGNKEIDPSTQ
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DNNHSFLRTLELYCSHELSKKVQASKPDVPTDISLPCGKWTLCWKWLNSEDSRPGKNRRR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCE
FVLLHENHAADNQPDVHLLYQELHAIMDSMYDGMWIIDSNGTTLHVNKAMKRIANIEPEE
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEHHHHHHHHHCCCHHH
MIGKSVTIPVLEGKFSAAVTLEALEQRKIVTRFDDYPNGIRCLNTSTPIFDKQGNIWRVV
HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHH
ACIRDLTELETLQRRLADAERTAFLRQAEAAAVQHSNEKKLVATGKVMRRCVSELEKAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHC
APSGILILGETGTGKTYAASYIHQKSPRADGPFISVNCAAIPPTLIESELFGYEKGAFTG
CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCC
ASRSGKKGYFGLADKGTLLLDEIGELPLSMQAKILHVLDGQGFRKIGGEKELRVDVRIIA
CCCCCCCCEEECCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCHHHCCCCCEEEEEEEEEE
ATNRPLDQLVNSGLFRADLYYRLRVLSINMPPLREHPEDIPALMMVFLDKACTRYNTIKT
ECCCCHHHHHCCCCEEEEHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
FSPSVIDCFSKHSWPGNVRELRAAVDFLAAMTESSVISMRDLPAYLLGDLPGICEDEEDE
CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEHHCCCHHHHCCCCCCCCCCCCC
SLPGQADSNLSFREAVENLERSLISEALAATGSTYKAAARLGISQSTVVRKAKQLRIPVT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCH
EKKRN
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]