| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is pntB [H]
Identifier: 220903497
GI number: 220903497
Start: 266427
End: 268928
Strand: Direct
Name: pntB [H]
Synonym: Ddes_0216
Alternate gene names: 220903497
Gene position: 266427-268928 (Clockwise)
Preceding gene: 220903496
Following gene: 220903498
Centisome position: 9.27
GC content: 61.27
Gene sequence:
>2502_bases ATGAATGCAATAACCTACAACATCATAGCCGGCATTCTTGTGGCTGCCGTCCTGTTCGGCCTTCGCCTCATGAACAAGGT TCCCACTGCGGTCCGGGGCAACCTCTTTTGCGCCTCTGCCATGGGCCTGGCCATTCTTGTCACCATGTTCAAGGACGGCT CGCTGGCCTCGCCCGCACTGTGGCTTGCCATTGCTGTAGGCATGACCCTGGGTCTTACCTTGTCCAACAAGGTCAAGATG ATCCAGATGCCGCAGATGGTGGCCTTTTTGCACGGCATCGGCGGCGGCGCGGCGGCCATCGTGAGCTTTCTTGTGCTCAC CGACACGGGCGCGCCCTCGGCCTTTGAGCGCGGCAGCGCCTGCCTGGCGCTTGCCATGGGCATGACTACCATAGCCGGTT CCTTTGTGGCTGCGGGCAAACTGCACCAGATTCTGCCGCAAAAGCCCGTTATTCTGCCCGATCACACCAAAATCATCATG GCGATTCTTGCGGTTATGGGTTTTTCCGTGCTTATGGGCACGGCCTTTCCGCAGTTTCTGTTCGGTTTCTTCATCTTTTT GATGTTTGTCACCGGCACGGCCTTCGGCATCGGCTTTACCCTCCGCGTGGGCGGGGCCGACATGCCCATCACCATCTCGC TGCTGAACTCAATGGGCGGCGTGTGTGCGGCCATTGCCGGTTTTGCGGTCAATGACCCCCTGCTTGTGGCCATCGGCGGT ATTATCGGCTCGTCCGGCTACCTGCTGACGCGCATCATGTGCCGCGCCATGAACAGGAAACTGCTGTCTATCCTGCTTGG CGAATCTTCTGTGGTGACCCCGTCGGCCCCGGCCAAAAAGGCTGCTCCTGCCGCCCGGGCTGCTGCCCCGGCCAGGTCCG TCGAAAGCGAAGCCGCAAAGCTTGTACAGAACGCCAGAAATGTGGTTATCGTGCCCGGTTACGGCATGGCCCTGGCCCAG GCCCAGTACAAGGTCAAACAGCTTGCCGACCTGCTGGAAAGCAGGGGCGCCAAGGTAAGTTACGGCATCCACCCCGTTGC CGGGCGCATGCCCGGGCATATGAACGTGCTGCTTGCCGAAGCCAACGTGGACTATGAGCACCTGCTCGAAATGGACACGG TGAACCCCATGTTCGCAGAGTCCGACCTTGTGATCGTGGTGGGCGCCAACGACGTTGTGAACCCGGCAGCCAACACTGCC GAAGGCACACCCATCTACGGCATGCCCATCCTCAAGGCCGACGAAGCCAAAAACATCATCATCGCCAACTATGACGACAA ACCCGGCTACGCGGGCGTGCCCAACCCCCTGTACGGACGTGACGGCGTGATCCTCATGACCGGCGACGCCGGCAAGACCT TTGACAGGCTGCTGGCCTATGCCCAGGGCAACGGCCCTGCGGACGAGGCCGCTCCCGCCGCCGGTGCGGACAGCAGGGAA GCCGAAGCCGCAAAGCTTGTACAGAACGCCAGAAATGTGGTTATCGTGCCCGGTTATGGCATGGCCCTGGCCCAGGCCCA GCACAAGGTCAAGCTGCTTGCCGATGCGCTGGAAAGCAGGGGCGTCAAGGTGAGCTACGGCATCCACCCCGTTGCCGGGC GCATGCCCGGGCATATGAACGTGCTGCTTGCCGAAGCCAACGTGGACTATGAAAATCTGCTCGAAATGGACACGGTGAAC CCCATGTTCGCAGAGTCCGACCTTGTGGTGATCATCGGGGCCAACGACGTTGTGAACCCGGCAGCCAACACTGCCGAAGG CACGCCCATCTACGGCATGCCCATCCTCAAGGCCGATGAATGCAGGAATATCATCGTCTGCAACTATGACGACAAGCCCG GCTACGCGGGCGTACCCAACCCCTTGTACGAGCGTGACGGCGTGATCCTCATGACCGGCGATGCGGCGAAAACCGTGGAC CGGCTGGTGAGCTTCGCCCAGGGCGAAAGCCCGGCCGCTCCCGCCGCGGGTACGGACAGCAGGGAAGCCGACGCGGCAAA GCTTGTGCAGAACGCCAGAAATGTGGTTATCGTGCCCGGTTACGGCATGGCCCTGGCCCAGGCCCAGTACAAGGTCAAAC AGCTTGCCGACCTGCTGGAAAGCAGGGGCGCCAGGGTAAGTTACGGCATCCATCCCGTGGCCGGGCGCATGCCCGGGCAT ATGAACGTGCTGCTTGCCGAAGCCAACGTGGACTATGAGCACCTGCTCGAAATGGACACGGTGAACCCCATGTTCGCAGA GTCCGACCTTGTGATCGTGGTGGGGGCCAACGACGTGGTGAACCCGGCAGCCAACTCTGCCGAAGGCACACCCATCTACG GCATGCCCATCCTCAAGGCCGACGAAGCCAAAAACATCATCATCGCCAACTATGACGACAAGCCCGGCTATGCGGGGGTA CCCAATCCCCTGTACGAGCGCGAGGGCGTGATCCTCATGACCGGCGACGCCGGCAAGACCTTTGACAGGCTGCTGGCATA TGCCCAGGGAGGGCAGGCCTAG
Upstream 100 bases:
>100_bases ACATTACCCACAAAATGCTGCGCATGGTCGCCGGAAAAAAGAAGTAGCCCTTCTCTGGCCTCTGCATCAACCATAAACCG GAAGAAAGGGTTGCTGTGAA
Downstream 100 bases:
>100_bases ACCCGATGTATTTGCCGTCTGGCATAAAGCAAAATGCTCTGCGCGGTCTCCGGAAAAACGCATGTCTCTGGATGTCCTTG AGGCCCACCCCACTCTGGCC
Product: NAD(P)(+) transhydrogenase
Products: NA
Alternate protein names: Nicotinamide nucleotide transhydrogenase subunit beta; Pyridine nucleotide transhydrogenase subunit beta [H]
Number of amino acids: Translated: 833; Mature: 833
Protein sequence:
>833_residues MNAITYNIIAGILVAAVLFGLRLMNKVPTAVRGNLFCASAMGLAILVTMFKDGSLASPALWLAIAVGMTLGLTLSNKVKM IQMPQMVAFLHGIGGGAAAIVSFLVLTDTGAPSAFERGSACLALAMGMTTIAGSFVAAGKLHQILPQKPVILPDHTKIIM AILAVMGFSVLMGTAFPQFLFGFFIFLMFVTGTAFGIGFTLRVGGADMPITISLLNSMGGVCAAIAGFAVNDPLLVAIGG IIGSSGYLLTRIMCRAMNRKLLSILLGESSVVTPSAPAKKAAPAARAAAPARSVESEAAKLVQNARNVVIVPGYGMALAQ AQYKVKQLADLLESRGAKVSYGIHPVAGRMPGHMNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANTA EGTPIYGMPILKADEAKNIIIANYDDKPGYAGVPNPLYGRDGVILMTGDAGKTFDRLLAYAQGNGPADEAAPAAGADSRE AEAAKLVQNARNVVIVPGYGMALAQAQHKVKLLADALESRGVKVSYGIHPVAGRMPGHMNVLLAEANVDYENLLEMDTVN PMFAESDLVVIIGANDVVNPAANTAEGTPIYGMPILKADECRNIIVCNYDDKPGYAGVPNPLYERDGVILMTGDAAKTVD RLVSFAQGESPAAPAAGTDSREADAAKLVQNARNVVIVPGYGMALAQAQYKVKQLADLLESRGARVSYGIHPVAGRMPGH MNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANSAEGTPIYGMPILKADEAKNIIIANYDDKPGYAGV PNPLYEREGVILMTGDAGKTFDRLLAYAQGGQA
Sequences:
>Translated_833_residues MNAITYNIIAGILVAAVLFGLRLMNKVPTAVRGNLFCASAMGLAILVTMFKDGSLASPALWLAIAVGMTLGLTLSNKVKM IQMPQMVAFLHGIGGGAAAIVSFLVLTDTGAPSAFERGSACLALAMGMTTIAGSFVAAGKLHQILPQKPVILPDHTKIIM AILAVMGFSVLMGTAFPQFLFGFFIFLMFVTGTAFGIGFTLRVGGADMPITISLLNSMGGVCAAIAGFAVNDPLLVAIGG IIGSSGYLLTRIMCRAMNRKLLSILLGESSVVTPSAPAKKAAPAARAAAPARSVESEAAKLVQNARNVVIVPGYGMALAQ AQYKVKQLADLLESRGAKVSYGIHPVAGRMPGHMNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANTA EGTPIYGMPILKADEAKNIIIANYDDKPGYAGVPNPLYGRDGVILMTGDAGKTFDRLLAYAQGNGPADEAAPAAGADSRE AEAAKLVQNARNVVIVPGYGMALAQAQHKVKLLADALESRGVKVSYGIHPVAGRMPGHMNVLLAEANVDYENLLEMDTVN PMFAESDLVVIIGANDVVNPAANTAEGTPIYGMPILKADECRNIIVCNYDDKPGYAGVPNPLYERDGVILMTGDAAKTVD RLVSFAQGESPAAPAAGTDSREADAAKLVQNARNVVIVPGYGMALAQAQYKVKQLADLLESRGARVSYGIHPVAGRMPGH MNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANSAEGTPIYGMPILKADEAKNIIIANYDDKPGYAGV PNPLYEREGVILMTGDAGKTFDRLLAYAQGGQA >Mature_833_residues MNAITYNIIAGILVAAVLFGLRLMNKVPTAVRGNLFCASAMGLAILVTMFKDGSLASPALWLAIAVGMTLGLTLSNKVKM IQMPQMVAFLHGIGGGAAAIVSFLVLTDTGAPSAFERGSACLALAMGMTTIAGSFVAAGKLHQILPQKPVILPDHTKIIM AILAVMGFSVLMGTAFPQFLFGFFIFLMFVTGTAFGIGFTLRVGGADMPITISLLNSMGGVCAAIAGFAVNDPLLVAIGG IIGSSGYLLTRIMCRAMNRKLLSILLGESSVVTPSAPAKKAAPAARAAAPARSVESEAAKLVQNARNVVIVPGYGMALAQ AQYKVKQLADLLESRGAKVSYGIHPVAGRMPGHMNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANTA EGTPIYGMPILKADEAKNIIIANYDDKPGYAGVPNPLYGRDGVILMTGDAGKTFDRLLAYAQGNGPADEAAPAAGADSRE AEAAKLVQNARNVVIVPGYGMALAQAQHKVKLLADALESRGVKVSYGIHPVAGRMPGHMNVLLAEANVDYENLLEMDTVN PMFAESDLVVIIGANDVVNPAANTAEGTPIYGMPILKADECRNIIVCNYDDKPGYAGVPNPLYERDGVILMTGDAAKTVD RLVSFAQGESPAAPAAGTDSREADAAKLVQNARNVVIVPGYGMALAQAQYKVKQLADLLESRGARVSYGIHPVAGRMPGH MNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANSAEGTPIYGMPILKADEAKNIIIANYDDKPGYAGV PNPLYEREGVILMTGDAGKTFDRLLAYAQGGQA
Specific function: The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane [H]
COG id: COG1282
COG function: function code C; NAD/NADP transhydrogenase beta subunit
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PNT beta subunit family [H]
Homologues:
Organism=Homo sapiens, GI122939155, Length=427, Percent_Identity=37.0023419203747, Blast_Score=249, Evalue=7e-66, Organism=Homo sapiens, GI122939153, Length=427, Percent_Identity=37.0023419203747, Blast_Score=249, Evalue=7e-66, Organism=Escherichia coli, GI1787886, Length=462, Percent_Identity=39.6103896103896, Blast_Score=303, Evalue=2e-83, Organism=Caenorhabditis elegans, GI17550456, Length=408, Percent_Identity=37.9901960784314, Blast_Score=254, Evalue=1e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012136 - InterPro: IPR004003 [H]
Pfam domain/function: PF02233 PNTB [H]
EC number: =1.6.1.2 [H]
Molecular weight: Translated: 87195; Mature: 87195
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAITYNIIAGILVAAVLFGLRLMNKVPTAVRGNLFCASAMGLAILVTMFKDGSLASPAL CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEHHHHHHHHHHHHHCCCCCCCHHH WLAIAVGMTLGLTLSNKVKMIQMPQMVAFLHGIGGGAAAIVSFLVLTDTGAPSAFERGSA HHHHHHHHHHCEEECCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHEECCCCCHHHHCCCH CLALAMGMTTIAGSFVAAGKLHQILPQKPVILPDHTKIIMAILAVMGFSVLMGTAFPQFL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH FGFFIFLMFVTGTAFGIGFTLRVGGADMPITISLLNSMGGVCAAIAGFAVNDPLLVAIGG HHHHHHHHHHHHHHHCCEEEEEECCCCCCEEHHHHHCCCHHHHHHHHHCCCCCCEEEEEH IIGSSGYLLTRIMCRAMNRKLLSILLGESSVVTPSAPAKKAAPAARAAAPARSVESEAAK HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHCCCHHHHHCCHHHHHHHHHH LVQNARNVVIVPGYGMALAQAQYKVKQLADLLESRGAKVSYGIHPVAGRMPGHMNVLLAE HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEE ANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANTAEGTPIYGMPILKADEAKNII CCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEEECCCCCCEE IANYDDKPGYAGVPNPLYGRDGVILMTGDAGKTFDRLLAYAQGNGPADEAAPAAGADSRE EEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCHH AEAAKLVQNARNVVIVPGYGMALAQAQHKVKLLADALESRGVKVSYGIHPVAGRMPGHMN HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEE VLLAEANVDYENLLEMDTVNPMFAESDLVVIIGANDVVNPAANTAEGTPIYGMPILKADE EEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCEEHHC CRNIIVCNYDDKPGYAGVPNPLYERDGVILMTGDAAKTVDRLVSFAQGESPAAPAAGTDS CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC READAAKLVQNARNVVIVPGYGMALAQAQYKVKQLADLLESRGARVSYGIHPVAGRMPGH CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC MNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANSAEGTPIYGMPILKA EEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEEEC DEAKNIIIANYDDKPGYAGVPNPLYEREGVILMTGDAGKTFDRLLAYAQGGQA CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MNAITYNIIAGILVAAVLFGLRLMNKVPTAVRGNLFCASAMGLAILVTMFKDGSLASPAL CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEHHHHHHHHHHHHHCCCCCCCHHH WLAIAVGMTLGLTLSNKVKMIQMPQMVAFLHGIGGGAAAIVSFLVLTDTGAPSAFERGSA HHHHHHHHHHCEEECCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHEECCCCCHHHHCCCH CLALAMGMTTIAGSFVAAGKLHQILPQKPVILPDHTKIIMAILAVMGFSVLMGTAFPQFL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH FGFFIFLMFVTGTAFGIGFTLRVGGADMPITISLLNSMGGVCAAIAGFAVNDPLLVAIGG HHHHHHHHHHHHHHHCCEEEEEECCCCCCEEHHHHHCCCHHHHHHHHHCCCCCCEEEEEH IIGSSGYLLTRIMCRAMNRKLLSILLGESSVVTPSAPAKKAAPAARAAAPARSVESEAAK HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHCCCHHHHHCCHHHHHHHHHH LVQNARNVVIVPGYGMALAQAQYKVKQLADLLESRGAKVSYGIHPVAGRMPGHMNVLLAE HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEE ANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANTAEGTPIYGMPILKADEAKNII CCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEEECCCCCCEE IANYDDKPGYAGVPNPLYGRDGVILMTGDAGKTFDRLLAYAQGNGPADEAAPAAGADSRE EEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCHH AEAAKLVQNARNVVIVPGYGMALAQAQHKVKLLADALESRGVKVSYGIHPVAGRMPGHMN HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEE VLLAEANVDYENLLEMDTVNPMFAESDLVVIIGANDVVNPAANTAEGTPIYGMPILKADE EEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCEEHHC CRNIIVCNYDDKPGYAGVPNPLYERDGVILMTGDAAKTVDRLVSFAQGESPAAPAAGTDS CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC READAAKLVQNARNVVIVPGYGMALAQAQYKVKQLADLLESRGARVSYGIHPVAGRMPGH CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC MNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDVVNPAANSAEGTPIYGMPILKA EEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEEEC DEAKNIIIANYDDKPGYAGVPNPLYEREGVILMTGDAGKTFDRLLAYAQGGQA CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]