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The map label for this gene is yhaM [H]

Identifier: 220903415

GI number: 220903415

Start: 165560

End: 166591

Strand: Reverse

Name: yhaM [H]

Synonym: Ddes_0129

Alternate gene names: 220903415

Gene position: 166591-165560 (Counterclockwise)

Preceding gene: 220903419

Following gene: 220903414

Centisome position: 5.8

GC content: 61.72

Gene sequence:

>1032_bases
ATGGAAAAAGGTTGTTACGTCAAAGACATTAGCCCCACGTCGGAAGCGCGGGGCCTGTTTGCAGTCAGTCAGGCGGCACA
GGGCCAGTCCCGCAACGGACCCTACTGGCGGCTCACCCTGGTGGACGCCAGCGGCAGTCTTGAAGCCAAGATATGGCACC
CTCTCAGCGCGGACTTCAGCGAAATTCCCGCCGGCGCGCTGGCGTGGGTTGAAGGCCGCGCAGGCCTGTACCGCGATCAG
GTGCAGCTTACCGTGGAGCATATGCGCCTGCTGGATGCGGCAGAAAGCGCCGCTGTGGACCAGACCGCCCTTATGCCCGC
CAGCCCCTACCCGCTGGACGACATGCTCCACGAACTGGACGGCGCCATCAAGGCAGAGTTCACACACGCCCCCTGGCGCA
AGCTGGTGCAGGGCTTTTTCAGCAATGCCGAAATGCGGGCTGCCTTTCGCGTATGCCCGGCAGCCAAAGGCGTACACCAC
GCCTATGTGGGCGGCCTGCTTGAGCATACCCTGAGTGTTTTCAACCTCTGCCGCCGCATTGCCGACCAGTATCCGGAACT
GGACCGGCAAACCCTGCTGGCGGGAGCGCTCTTTCACGATATCGGCAAGCTGCGGGAGTTTTCCGGTGGCCTTGCCAACG
ATTATACCGATGAAGGCCGTCTGCTCGGCCATCTTATGCTGGGCATAGAAATGCTCGCTCCCTTCATGGCCAGATCCGGC
CTTGAAGAGCCGCTGCAAAGGCATCTCAAGCACCTTATCCTGAGCCATCACGGCGAACTTCAGTTTGGCGCGGTACGCCC
CCCCCACACTCCTGAAGCCATGGCCCTGCACTATGCCGACAACCTGGATGCCAAGATGGCCCAGTGCCGGGGCCTTTTCG
CACAAATGGAAGAAGACGGACAGGACTGGACCCCCTGGCAGGCCACGCTGGGCCGCCCCGTACACCGGGCCGCGCGCACC
CCGGAAAAAGCCGCCCCCGCAACCCGTAAAAAGGCGGTCAAGGAAGAATGTTTGTCACTTTTGAAGGTATAG

Upstream 100 bases:

>100_bases
AAGGGAAATTCGAAAAAGCTTCGCTATGAGCCGCCCTTGCGGCGGCGCTCAAAACGCACGGGCGTCAGGCGCTCCTGGCC
AGACGCTCCTGGATAGATAT

Downstream 100 bases:

>100_bases
AAGGCGCGGGAAAATCCACGGCCATTGACTATCTGTCAGACTACCTGCAAGCGCGCGGCCATGACCCCGTACTGACCAGA
GAGCCTGGCGGCAGTGCCCT

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MEKGCYVKDISPTSEARGLFAVSQAAQGQSRNGPYWRLTLVDASGSLEAKIWHPLSADFSEIPAGALAWVEGRAGLYRDQ
VQLTVEHMRLLDAAESAAVDQTALMPASPYPLDDMLHELDGAIKAEFTHAPWRKLVQGFFSNAEMRAAFRVCPAAKGVHH
AYVGGLLEHTLSVFNLCRRIADQYPELDRQTLLAGALFHDIGKLREFSGGLANDYTDEGRLLGHLMLGIEMLAPFMARSG
LEEPLQRHLKHLILSHHGELQFGAVRPPHTPEAMALHYADNLDAKMAQCRGLFAQMEEDGQDWTPWQATLGRPVHRAART
PEKAAPATRKKAVKEECLSLLKV

Sequences:

>Translated_343_residues
MEKGCYVKDISPTSEARGLFAVSQAAQGQSRNGPYWRLTLVDASGSLEAKIWHPLSADFSEIPAGALAWVEGRAGLYRDQ
VQLTVEHMRLLDAAESAAVDQTALMPASPYPLDDMLHELDGAIKAEFTHAPWRKLVQGFFSNAEMRAAFRVCPAAKGVHH
AYVGGLLEHTLSVFNLCRRIADQYPELDRQTLLAGALFHDIGKLREFSGGLANDYTDEGRLLGHLMLGIEMLAPFMARSG
LEEPLQRHLKHLILSHHGELQFGAVRPPHTPEAMALHYADNLDAKMAQCRGLFAQMEEDGQDWTPWQATLGRPVHRAART
PEKAAPATRKKAVKEECLSLLKV
>Mature_343_residues
MEKGCYVKDISPTSEARGLFAVSQAAQGQSRNGPYWRLTLVDASGSLEAKIWHPLSADFSEIPAGALAWVEGRAGLYRDQ
VQLTVEHMRLLDAAESAAVDQTALMPASPYPLDDMLHELDGAIKAEFTHAPWRKLVQGFFSNAEMRAAFRVCPAAKGVHH
AYVGGLLEHTLSVFNLCRRIADQYPELDRQTLLAGALFHDIGKLREFSGGLANDYTDEGRLLGHLMLGIEMLAPFMARSG
LEEPLQRHLKHLILSHHGELQFGAVRPPHTPEAMALHYADNLDAKMAQCRGLFAQMEEDGQDWTPWQATLGRPVHRAART
PEKAAPATRKKAVKEECLSLLKV

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 37917; Mature: 37917

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKGCYVKDISPTSEARGLFAVSQAAQGQSRNGPYWRLTLVDASGSLEAKIWHPLSADFS
CCCCCEEECCCCCHHHCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCHH
EIPAGALAWVEGRAGLYRDQVQLTVEHMRLLDAAESAAVDQTALMPASPYPLDDMLHELD
HCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHC
GAIKAEFTHAPWRKLVQGFFSNAEMRAAFRVCPAAKGVHHAYVGGLLEHTLSVFNLCRRI
CHHEECCCCCHHHHHHHHHHCCHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ADQYPELDRQTLLAGALFHDIGKLREFSGGLANDYTDEGRLLGHLMLGIEMLAPFMARSG
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LEEPLQRHLKHLILSHHGELQFGAVRPPHTPEAMALHYADNLDAKMAQCRGLFAQMEEDG
HHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC
QDWTPWQATLGRPVHRAARTPEKAAPATRKKAVKEECLSLLKV
CCCCCHHHHHCCHHHHHHCCCHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEKGCYVKDISPTSEARGLFAVSQAAQGQSRNGPYWRLTLVDASGSLEAKIWHPLSADFS
CCCCCEEECCCCCHHHCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCHH
EIPAGALAWVEGRAGLYRDQVQLTVEHMRLLDAAESAAVDQTALMPASPYPLDDMLHELD
HCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHC
GAIKAEFTHAPWRKLVQGFFSNAEMRAAFRVCPAAKGVHHAYVGGLLEHTLSVFNLCRRI
CHHEECCCCCHHHHHHHHHHCCHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ADQYPELDRQTLLAGALFHDIGKLREFSGGLANDYTDEGRLLGHLMLGIEMLAPFMARSG
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LEEPLQRHLKHLILSHHGELQFGAVRPPHTPEAMALHYADNLDAKMAQCRGLFAQMEEDG
HHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC
QDWTPWQATLGRPVHRAARTPEKAAPATRKKAVKEECLSLLKV
CCCCCHHHHHCCHHHHHHCCCHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA