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The map label for this gene is ybbM [H]

Identifier: 218906138

GI number: 218906138

Start: 4766279

End: 4767076

Strand: Direct

Name: ybbM [H]

Synonym: BCAH820_5050

Alternate gene names: 218906138

Gene position: 4766279-4767076 (Clockwise)

Preceding gene: 218906137

Following gene: 218906144

Centisome position: 89.88

GC content: 39.1

Gene sequence:

>798_bases
TTGAAGGGCGTTATTGAACTCCAAATTTGGCAACTTGCCGCTGCATATATTTTCATTCTTATTTTAATTGGGCTTGTGAA
GTTAAAAGGAATACCTCGCGAAAAACAAATCGCGCTCGCAACATTCCGTATGACGATTCAGCTCGTACTTGTTGCCTATG
TCCTTACATACGTATTTGAAAACAGTAATCCATTTTATACAATTGCTCTCATTACTTCTATTACTACCTTTGCAATTTTT
AATATTTATAAACGAGTTAACATCCCTATGTCCAAAGAATTAAAACGAGTAGCCGCCCTTTCTATGGTAGCCGGATCCAT
TGGGCCACTTCTACTATTTATCTTTGTTATTATCGGACATGATCCTTGGTATGCGCCGCAATATATCGTTCCGATTACCG
GAATGTTAGTTGGAAATGCGATGACCGGTGTTTCTCTCGGTGCAAATACGTTCTTAAACAATATGAAATCGCAAAGAGGT
CAAATTGAAGGAGCACTTATGCTCGGTGCAACGCCAAAAGAAGCCACTGCTCCACTCATACGCGACGCTTTTGACTCTGC
CATTTTACCAACGATCAATTCTATGGTCGGAATGGGAATTATAAGCTTACCAGGCATGATGACAGGACAAATCTTATCTG
GTGTATCACCATTTACAGCTATTCAATATCAAATCGCAATTATACTTGGTATTTCTGGAAGTACCGCTTTTGCGGTTATT
ATCTTTTTACAGCTTGGCTATAAAACATTCTTTAATAAGCGTTGTCAGTTGAAAGAAGTAGACTATGGCGGGCGTTAA

Upstream 100 bases:

>100_bases
ATCTTCATCACACACTCACAACAACTTCCAGAAGAAATTGCGGACGATATTATTGAGATTAGTAAAGCAAACGGTGCAAC
TAGAAAGGAAGTGCTCTCAG

Downstream 100 bases:

>100_bases
ATTGTGCACTGTTCATGGTAGATGAAATTATATCGACGATTTTTCGAATATATCTATCATAACTCAAAATATATCAACGA
TTTTTGAAATATATCGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKGVIELQIWQLAAAYIFILILIGLVKLKGIPREKQIALATFRMTIQLVLVAYVLTYVFENSNPFYTIALITSITTFAIF
NIYKRVNIPMSKELKRVAALSMVAGSIGPLLLFIFVIIGHDPWYAPQYIVPITGMLVGNAMTGVSLGANTFLNNMKSQRG
QIEGALMLGATPKEATAPLIRDAFDSAILPTINSMVGMGIISLPGMMTGQILSGVSPFTAIQYQIAIILGISGSTAFAVI
IFLQLGYKTFFNKRCQLKEVDYGGR

Sequences:

>Translated_265_residues
MKGVIELQIWQLAAAYIFILILIGLVKLKGIPREKQIALATFRMTIQLVLVAYVLTYVFENSNPFYTIALITSITTFAIF
NIYKRVNIPMSKELKRVAALSMVAGSIGPLLLFIFVIIGHDPWYAPQYIVPITGMLVGNAMTGVSLGANTFLNNMKSQRG
QIEGALMLGATPKEATAPLIRDAFDSAILPTINSMVGMGIISLPGMMTGQILSGVSPFTAIQYQIAIILGISGSTAFAVI
IFLQLGYKTFFNKRCQLKEVDYGGR
>Mature_265_residues
MKGVIELQIWQLAAAYIFILILIGLVKLKGIPREKQIALATFRMTIQLVLVAYVLTYVFENSNPFYTIALITSITTFAIF
NIYKRVNIPMSKELKRVAALSMVAGSIGPLLLFIFVIIGHDPWYAPQYIVPITGMLVGNAMTGVSLGANTFLNNMKSQRG
QIEGALMLGATPKEATAPLIRDAFDSAILPTINSMVGMGIISLPGMMTGQILSGVSPFTAIQYQIAIILGISGSTAFAVI
IFLQLGYKTFFNKRCQLKEVDYGGR

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=246, Percent_Identity=34.9593495934959, Blast_Score=149, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 28924; Mature: 28924

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGVIELQIWQLAAAYIFILILIGLVKLKGIPREKQIALATFRMTIQLVLVAYVLTYVFE
CCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
NSNPFYTIALITSITTFAIFNIYKRVNIPMSKELKRVAALSMVAGSIGPLLLFIFVIIGH
CCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
DPWYAPQYIVPITGMLVGNAMTGVSLGANTFLNNMKSQRGQIEGALMLGATPKEATAPLI
CCCCCCEEEHHHHHHHHHCHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
RDAFDSAILPTINSMVGMGIISLPGMMTGQILSGVSPFTAIQYQIAIILGISGSTAFAVI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHEEEEEEEEEECCCHHHHHH
IFLQLGYKTFFNKRCQLKEVDYGGR
HHHHHHHHHHHCCCCCEECCCCCCC
>Mature Secondary Structure
MKGVIELQIWQLAAAYIFILILIGLVKLKGIPREKQIALATFRMTIQLVLVAYVLTYVFE
CCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
NSNPFYTIALITSITTFAIFNIYKRVNIPMSKELKRVAALSMVAGSIGPLLLFIFVIIGH
CCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
DPWYAPQYIVPITGMLVGNAMTGVSLGANTFLNNMKSQRGQIEGALMLGATPKEATAPLI
CCCCCCEEEHHHHHHHHHCHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
RDAFDSAILPTINSMVGMGIISLPGMMTGQILSGVSPFTAIQYQIAIILGISGSTAFAVI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHEEEEEEEEEECCCHHHHHH
IFLQLGYKTFFNKRCQLKEVDYGGR
HHHHHHHHHHHCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]