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The map label for this gene is sodC [H]

Identifier: 218906106

GI number: 218906106

Start: 4728786

End: 4729283

Strand: Reverse

Name: sodC [H]

Synonym: BCAH820_5018

Alternate gene names: 218906106

Gene position: 4729283-4728786 (Counterclockwise)

Preceding gene: 218906107

Following gene: 218906104

Centisome position: 89.19

GC content: 41.77

Gene sequence:

>498_bases
ATGGCAGGTTGTGACCAAGGAAAGCCGAAAGAAATTGACGTGAAATTACATAATGCTTCAGGTGATGAAGTGGGGACTGC
GAAAGTAACTCAGCAAACAAGCGGAGTGAAAATTACGATTAAAGGGGAAGGTTTCGCGCCAGGCCCGCACGGACTACATG
TACACGAAATTGGAGAGTGTAAAGCACCTCGTTTTGAATCAGCTGGAAATCATTTTAATCCAGATGATAAAAAGCATGGA
CTACTCAATCCGAAGGGTGCAGAAAACGGTGATTTACCGAACGTAATTGCAGACGGTTCTGGGAAAATTAAAGCAGAAAT
TGATGCACCGCATATAACGCTTGAAGAAGGAAAAACGACGATTCATAGAAAAGATGGAGCGTCTATTATTATTACGGAAA
ACGCTGATGATGGTATGACACAACCGACAGGTAAATCAGGTGATCGAATTGCTTGTGGTGTCATTGTAAAAAAAGCGTCG
GATATGAAGAAAAAGTAA

Upstream 100 bases:

>100_bases
TATGTTTCCCTCTATGCTCGGACAATCTAAGGGCAGAATGTATTTTGGAGGGAATGAAATGAAAAAACGGCTTTTTTTCA
GTTGTTGTTTACTATTTCTG

Downstream 100 bases:

>100_bases
AAGCTACCGTGCGCGGTAGCTTTTTTGTGTAGTGTAAGTGAAAAGATATCAGCGATTATTGAGATATATCGGCGATTATT
GGAATATATCGACCGTAACT

Product: superoxide dismutase, Cu-Zn

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MAGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFAPGPHGLHVHEIGECKAPRFESAGNHFNPDDKKHG
LLNPKGAENGDLPNVIADGSGKIKAEIDAPHITLEEGKTTIHRKDGASIIITENADDGMTQPTGKSGDRIACGVIVKKAS
DMKKK

Sequences:

>Translated_165_residues
MAGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFAPGPHGLHVHEIGECKAPRFESAGNHFNPDDKKHG
LLNPKGAENGDLPNVIADGSGKIKAEIDAPHITLEEGKTTIHRKDGASIIITENADDGMTQPTGKSGDRIACGVIVKKAS
DMKKK
>Mature_164_residues
AGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFAPGPHGLHVHEIGECKAPRFESAGNHFNPDDKKHGL
LNPKGAENGDLPNVIADGSGKIKAEIDAPHITLEEGKTTIHRKDGASIIITENADDGMTQPTGKSGDRIACGVIVKKASD
MKKK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=123, Percent_Identity=37.3983739837398, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI4507149, Length=128, Percent_Identity=39.84375, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787934, Length=156, Percent_Identity=31.4102564102564, Blast_Score=63, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71981879, Length=146, Percent_Identity=35.6164383561644, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71981876, Length=146, Percent_Identity=35.6164383561644, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17136496, Length=144, Percent_Identity=36.8055555555556, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281363087, Length=125, Percent_Identity=37.6, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24652342, Length=125, Percent_Identity=37.6, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17321; Mature: 17189

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFAPGPHGLHVHEIGEC
CCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCC
KAPRFESAGNHFNPDDKKHGLLNPKGAENGDLPNVIADGSGKIKAEIDAPHITLEEGKTT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEEECCCEE
IHRKDGASIIITENADDGMTQPTGKSGDRIACGVIVKKASDMKKK
EEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
>Mature Secondary Structure 
AGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFAPGPHGLHVHEIGEC
CCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCC
KAPRFESAGNHFNPDDKKHGLLNPKGAENGDLPNVIADGSGKIKAEIDAPHITLEEGKTT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEEECCCEE
IHRKDGASIIITENADDGMTQPTGKSGDRIACGVIVKKASDMKKK
EEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]