Click here to switch to the map view.

The map label for this gene is ywbD [H]

Identifier: 218905765

GI number: 218905765

Start: 4405233

End: 4406432

Strand: Reverse

Name: ywbD [H]

Synonym: BCAH820_4653

Alternate gene names: 218905765

Gene position: 4406432-4405233 (Counterclockwise)

Preceding gene: 218905766

Following gene: 218905762

Centisome position: 83.1

GC content: 34.0

Gene sequence:

>1200_bases
ATGCGATCAGAAGTAACTGTAAAAATAAAACCGAAATTTATAAAAGAAATTAAAAGTGGATATCCGCTTATTTTAAAAGA
TGCGATTCAAAATTTAAATGATGTTCAGGAAGAAGGAACAATCATTAAAGTGGTAGATGAGAAGAACCACTTTGTCGGAA
AAGGTTATTATGGAAAACAAAATAAAGGATACGGTTGGATTTTAACGAGAAAAGAGAGTGAACAAATTAATCAATCTTTC
TTTGAAAGTAAAATAAAATCTGCCTTACATAAACGAAAGCAATTTTACAAATCAAGTGATACGACAGCATTCCGCGCCCT
AAACGGTGAAGGTGATGGTCTTGGTGGCTTAATCATCGATTATTATGACGGTTATTATGTAGTGAGCTGGTATAGCGAAG
GGATTTATACTTTCAGAGATGAGATTATAGCAGCTCTTCAAAAAGTAGCAAACTTTAAAGGTATTTATGAGAAGAAGCGT
TTTGATACGAAAGGGAAATACATTGAAGGCGATGATTTCGTAGCAGGGGAGCGCGGTGAGTTCCCGCTTATCGTAAAAGA
GAATGGTGTGAACTTCGCTGTTTATTTAAATGACGGAGCGATGGTTGGGGTATTTTTAGATCAACGTAACGTGCGAAAAC
AAATTCGTGATAAATATGCGAAGGGAAGAACCGTGTTAAATATGTTCTCTTATACAGGGGCTTTTTCTGTATTTGCAGCG
CTTGGTGGGGCGAGTAAAACGACGAGTGTCGACCTTGCAAATCGTAGTTTAAGTAAAACAATTGAGCAGTTTAGTGTAAA
TGAAGTTGATTATGAAGCGCAAGATATTATCGTAGAAGATGTATTCCTTTACTTTAAATATGCAGCGAAGAAAAAGATGA
AGTTTGATATGGTTGTATTAGACCCTCCAAGCTTTGCACGCTCGAAAAAATATACATTTAGTGCAGCAAAAGATTATAAA
AATTTATTAAAAGAAACAATTGCCATTACAGAAAATAACGGTATTATCGTTGCTTCTACAAATTGTAGTGCATTCGATAT
GAAAAAGTTTAAAGGCTTTATTGATACAGCATTTAAAGAAATGAATGGTAAATATAAAGTATTAGAAGAACATTCTTTAC
CAGAAGATTTCCGTACAATCGATCAATTTAAAGAAGGAGACTATTTAAAAGTAGTTTTCATCGAGAAAATTAAAGGGTAA

Upstream 100 bases:

>100_bases
CAAAGCAATAATATGGTATAGTGAAACGAGGCTGTTTTTCAGTCTCGTTTTTTAAGTGCTTCCTATAAAGAAAGCATGCA
AATGGAAAGGAAGTTTTTAT

Downstream 100 bases:

>100_bases
TAAAGAAAAAGGAGCTCGAGTTTACTTGAGCTCCTTTTCTTATTGAACGATATTTTGTACCCTACCGACTTGCCCGTCCT
GCAATCGAACTTTAATGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MRSEVTVKIKPKFIKEIKSGYPLILKDAIQNLNDVQEEGTIIKVVDEKNHFVGKGYYGKQNKGYGWILTRKESEQINQSF
FESKIKSALHKRKQFYKSSDTTAFRALNGEGDGLGGLIIDYYDGYYVVSWYSEGIYTFRDEIIAALQKVANFKGIYEKKR
FDTKGKYIEGDDFVAGERGEFPLIVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDKYAKGRTVLNMFSYTGAFSVFAA
LGGASKTTSVDLANRSLSKTIEQFSVNEVDYEAQDIIVEDVFLYFKYAAKKKMKFDMVVLDPPSFARSKKYTFSAAKDYK
NLLKETIAITENNGIIVASTNCSAFDMKKFKGFIDTAFKEMNGKYKVLEEHSLPEDFRTIDQFKEGDYLKVVFIEKIKG

Sequences:

>Translated_399_residues
MRSEVTVKIKPKFIKEIKSGYPLILKDAIQNLNDVQEEGTIIKVVDEKNHFVGKGYYGKQNKGYGWILTRKESEQINQSF
FESKIKSALHKRKQFYKSSDTTAFRALNGEGDGLGGLIIDYYDGYYVVSWYSEGIYTFRDEIIAALQKVANFKGIYEKKR
FDTKGKYIEGDDFVAGERGEFPLIVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDKYAKGRTVLNMFSYTGAFSVFAA
LGGASKTTSVDLANRSLSKTIEQFSVNEVDYEAQDIIVEDVFLYFKYAAKKKMKFDMVVLDPPSFARSKKYTFSAAKDYK
NLLKETIAITENNGIIVASTNCSAFDMKKFKGFIDTAFKEMNGKYKVLEEHSLPEDFRTIDQFKEGDYLKVVFIEKIKG
>Mature_399_residues
MRSEVTVKIKPKFIKEIKSGYPLILKDAIQNLNDVQEEGTIIKVVDEKNHFVGKGYYGKQNKGYGWILTRKESEQINQSF
FESKIKSALHKRKQFYKSSDTTAFRALNGEGDGLGGLIIDYYDGYYVVSWYSEGIYTFRDEIIAALQKVANFKGIYEKKR
FDTKGKYIEGDDFVAGERGEFPLIVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDKYAKGRTVLNMFSYTGAFSVFAA
LGGASKTTSVDLANRSLSKTIEQFSVNEVDYEAQDIIVEDVFLYFKYAAKKKMKFDMVVLDPPSFARSKKYTFSAAKDYK
NLLKETIAITENNGIIVASTNCSAFDMKKFKGFIDTAFKEMNGKYKVLEEHSLPEDFRTIDQFKEGDYLKVVFIEKIKG

Specific function: Unknown

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Escherichia coli, GI145693111, Length=380, Percent_Identity=27.8947368421053, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1787181, Length=174, Percent_Identity=34.4827586206897, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: NA

Molecular weight: Translated: 45520; Mature: 45520

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSEVTVKIKPKFIKEIKSGYPLILKDAIQNLNDVQEEGTIIKVVDEKNHFVGKGYYGKQ
CCCCEEEEECHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCC
NKGYGWILTRKESEQINQSFFESKIKSALHKRKQFYKSSDTTAFRALNGEGDGLGGLIID
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEE
YYDGYYVVSWYSEGIYTFRDEIIAALQKVANFKGIYEKKRFDTKGKYIEGDDFVAGERGE
ECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEECCCCCC
FPLIVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDKYAKGRTVLNMFSYTGAFSVFAA
CEEEEEECCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LGGASKTTSVDLANRSLSKTIEQFSVNEVDYEAQDIIVEDVFLYFKYAAKKKMKFDMVVL
HCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE
DPPSFARSKKYTFSAAKDYKNLLKETIAITENNGIIVASTNCSAFDMKKFKGFIDTAFKE
CCCCHHCCCCEEEHHHHHHHHHHHHHHEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH
MNGKYKVLEEHSLPEDFRTIDQFKEGDYLKVVFIEKIKG
CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCC
>Mature Secondary Structure
MRSEVTVKIKPKFIKEIKSGYPLILKDAIQNLNDVQEEGTIIKVVDEKNHFVGKGYYGKQ
CCCCEEEEECHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCC
NKGYGWILTRKESEQINQSFFESKIKSALHKRKQFYKSSDTTAFRALNGEGDGLGGLIID
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEE
YYDGYYVVSWYSEGIYTFRDEIIAALQKVANFKGIYEKKRFDTKGKYIEGDDFVAGERGE
ECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEECCCCCC
FPLIVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDKYAKGRTVLNMFSYTGAFSVFAA
CEEEEEECCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LGGASKTTSVDLANRSLSKTIEQFSVNEVDYEAQDIIVEDVFLYFKYAAKKKMKFDMVVL
HCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE
DPPSFARSKKYTFSAAKDYKNLLKETIAITENNGIIVASTNCSAFDMKKFKGFIDTAFKE
CCCCHHCCCCEEEHHHHHHHHHHHHHHEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH
MNGKYKVLEEHSLPEDFRTIDQFKEGDYLKVVFIEKIKG
CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]