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The map label for this gene is yedU [C]

Identifier: 218905690

GI number: 218905690

Start: 4333221

End: 4333883

Strand: Reverse

Name: yedU [C]

Synonym: BCAH820_4578

Alternate gene names: 218905690

Gene position: 4333883-4333221 (Counterclockwise)

Preceding gene: 218905691

Following gene: 218905689

Centisome position: 81.73

GC content: 39.52

Gene sequence:

>663_bases
ATGTTGAAAAGGATATTGTTAGTTTCAACAAGCGCTCATGATATGAATGGACACCCGACTGGTTTGTGGCTGGAAGAGCT
CGCAGCTCCTTATAACTTGTTTAAAAAAGCTAAGTTCGATGTTGATATTGTGTCGATACAGGGCGGTAGAGTGCCGATTG
ATAGAGTTTCTATTCCGAACGGGATACCTCGTGAATTTAAGCATGTCGCTTCTTTATTGCAAAATACGAAGTCGATCTCA
ACGGTTCATTTTTCGGATTATGATGCGGTTTTATTTGGTGGTGGACACGGGGCGATTGTAGATTTTCCAGGTAATCCATA
TGTTGCAAATTTAATTGTGAATATGTACAACAACAACCGAATTGTAGCGGCTGTTTGTCACGGAGTAAGTTCTTTAGTCG
GTGTGAAAAATAAGGACGGCTCGTTTTTTAGTGCGGGTAAGCATATAACAGGTTATACAAATGATGAGGAAAAAGCTGTA
CATTTAGAAAAGCGAGTGCCGTTTTTGTTAGAAAATAAATTGAAAGAAGAAGGGGCTTTGTTTTATGTGGCTCCAAATTT
TACGCCGCACGTCGTAGTAGATGAGCGTTTAATTACAGGGCAAAATCCGCAGTCTAGTATGGAAATAGGGAAAGCTATAA
GAAGAGCTGTAAATAAAGTATAG

Upstream 100 bases:

>100_bases
GCTCACTTTTTACAAAAGGTCAGCTTATTGTTATCGTTTTTTCCCTTGCTATATGAATGATAAGAACACTCCATACATAA
ATAGGTAGTAAGGAGGGGAT

Downstream 100 bases:

>100_bases
AAAAAGTGCTCGTTACTCATAAAGGTAGCGGGCATTTTTCTATAGTATAAATGACCCCTTAAACTAAAAAGATGTATTGA
GTATAGTGACTTCATTTATA

Product: thiJ/pfpI family protein

Products: NA

Alternate protein names: ThiJ/PfpI Family Protein; ThiJ/PfpI Domain Protein; ThiJ/PfpI; DJ-1/PfpI Family Protein; Intracellular Protease/Amidase; DJ-1/PfpI Family; NonF-Related Protein; DJ-1/PfpI-Family Transcriptional Regulator; Peptidase; DJ-1/PfPI Family Protein; Intracellular Protease/Amidase-Like Protein; Intracellular Protease/Amidase ThiJ/PfpL Family; Exported Pfp1 Family Protein; Intracellular Protease/Amidase-Like; C56 Family Peptidase; Transcriptional Regulator; Amidotransferase; Protease I; Intracellular Protease Amidase; ThiJ/PfpI Protein; Regulatory Protein; NonF Protein; ThiJ Protein; Chaperone Protein; Thij/Pfpi Domain-Containing Protein; Chaperone HchA; Transcriptional Regulator Fis Family; Protease; Intracellular Protease/Amidase ThiJ/PfpL Family Protein; Chaperone Protein HchA; Pfp1 Family Protein; Fis Family Transcriptional Regulator; DJ-1/PfpI Family Transcriptional Regulator

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLKRILLVSTSAHDMNGHPTGLWLEELAAPYNLFKKAKFDVDIVSIQGGRVPIDRVSIPNGIPREFKHVASLLQNTKSIS
TVHFSDYDAVLFGGGHGAIVDFPGNPYVANLIVNMYNNNRIVAAVCHGVSSLVGVKNKDGSFFSAGKHITGYTNDEEKAV
HLEKRVPFLLENKLKEEGALFYVAPNFTPHVVVDERLITGQNPQSSMEIGKAIRRAVNKV

Sequences:

>Translated_220_residues
MLKRILLVSTSAHDMNGHPTGLWLEELAAPYNLFKKAKFDVDIVSIQGGRVPIDRVSIPNGIPREFKHVASLLQNTKSIS
TVHFSDYDAVLFGGGHGAIVDFPGNPYVANLIVNMYNNNRIVAAVCHGVSSLVGVKNKDGSFFSAGKHITGYTNDEEKAV
HLEKRVPFLLENKLKEEGALFYVAPNFTPHVVVDERLITGQNPQSSMEIGKAIRRAVNKV
>Mature_220_residues
MLKRILLVSTSAHDMNGHPTGLWLEELAAPYNLFKKAKFDVDIVSIQGGRVPIDRVSIPNGIPREFKHVASLLQNTKSIS
TVHFSDYDAVLFGGGHGAIVDFPGNPYVANLIVNMYNNNRIVAAVCHGVSSLVGVKNKDGSFFSAGKHITGYTNDEEKAV
HLEKRVPFLLENKLKEEGALFYVAPNFTPHVVVDERLITGQNPQSSMEIGKAIRRAVNKV

Specific function: Not Known. [C]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6320742, Length=223, Percent_Identity=32.2869955156951, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6324967, Length=238, Percent_Identity=28.9915966386555, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6324975, Length=238, Percent_Identity=28.9915966386555, Blast_Score=74, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323984, Length=237, Percent_Identity=27.0042194092827, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24163; Mature: 24163

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRILLVSTSAHDMNGHPTGLWLEELAAPYNLFKKAKFDVDIVSIQGGRVPIDRVSIPN
CCCEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCEEEEEECCCCCEEEEECCCC
GIPREFKHVASLLQNTKSISTVHFSDYDAVLFGGGHGAIVDFPGNPYVANLIVNMYNNNR
CCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCEEEEECCCCCEEEEEEEEEECCCE
IVAAVCHGVSSLVGVKNKDGSFFSAGKHITGYTNDEEKAVHLEKRVPFLLENKLKEEGAL
EEEHHHHHHHHHHCCCCCCCCEEECCCEEECCCCCCHHEEEHHHCCCHHHHHHHHHCCCE
FYVAPNFTPHVVVDERLITGQNPQSSMEIGKAIRRAVNKV
EEECCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKRILLVSTSAHDMNGHPTGLWLEELAAPYNLFKKAKFDVDIVSIQGGRVPIDRVSIPN
CCCEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCEEEEEECCCCCEEEEECCCC
GIPREFKHVASLLQNTKSISTVHFSDYDAVLFGGGHGAIVDFPGNPYVANLIVNMYNNNR
CCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCEEEEECCCCCEEEEEEEEEECCCE
IVAAVCHGVSSLVGVKNKDGSFFSAGKHITGYTNDEEKAVHLEKRVPFLLENKLKEEGAL
EEEHHHHHHHHHHCCCCCCCCEEECCCEEECCCCCCHHEEEHHHCCCHHHHHHHHHCCCE
FYVAPNFTPHVVVDERLITGQNPQSSMEIGKAIRRAVNKV
EEECCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA