Click here to switch to the map view.

The map label for this gene is colA [H]

Identifier: 218904889

GI number: 218904889

Start: 3598066

End: 3599907

Strand: Reverse

Name: colA [H]

Synonym: BCAH820_3772

Alternate gene names: 218904889

Gene position: 3599907-3598066 (Counterclockwise)

Preceding gene: 218904893

Following gene: 218904887

Centisome position: 67.89

GC content: 34.8

Gene sequence:

>1842_bases
ATGAAAATATTTCAAAAAATGTGTGCGTCAACTGTAATCATTACAACACTTTTAGGAATAGGAGGTACTGTCAATAGTGT
ACATGCTGATTCTATAGAACAGCAGAGTAAATTAGGAATAGACCAAGAAACAGATAAGCAAATCATTGTAAAATTTAAAG
CGGATTTGAAATTTCCATATGAAGATGGTATTGAAAAACAAATACAATCTCAAACGAACGACAAAGTACTAGAAGATCTT
TTGGTAGAATATCCAGATGTAACATTCACGCGCTTATTCACATCTGTAAGTCCAGAGGAAATAGAAGACCTTGAAGTGAA
AGCACCCAATAATGTATCTACAAGTTTATTAAACTACTATATTCTTCAAACTCAAAATGGTGAGCAGAAAGAAGAACTAG
TAGATAGGTTAAAGAAATCTTGTTTAATAGAAGATGTGTATATGAAGAAACAAGAAAAAATAACGCCACCAGAAGTGCAA
CCATCAAGTGTATCTCTTAGTCCTAATAACAATCCTAGATTTAAACAACAAGGTTATTTAGAAGCAGCACCATACGGTAT
TAATGTGCCTTTCGCCTGGGAAGTTCAAGGCGGTAAAGGAAGTGGTATAACTTTTGTTGATATGGAATATGGATGGTTAT
TAAATCATGAGGATTTAGTACATCAAAATATTGAATTAATGTCTGGAATAAATATAGATCAACATGTCGGTCATGGGACG
TCTGTACTAGGAATTGTATCCTCTGAGGACAATGAAGTTGGGAATATTGGGATTGCGCCAAAAGCGAAAGCAAAGGTGAT
TTCTCAAATAAGAGATAACGGACAGTATAATACAGCTGATGCAATATTAAGTGCTGTGAATCAGTTAGAAGCTGGGGATG
TTTTATTATTAGAGGCACAAGCTTCCTTTGATGGATATGGTGATAAATATTTACCTGTTGAGGTACAACCAGATATCTTT
GATGCAATTCGTGCCGGTACAGATAAAGGTGTTGTCATTATAGAAGCTGGAGCAAATGGTTGGAATGATTTAGACCAATT
TAAAGATAGAAATGGTAAACAAATTTTAAATCGTAATAGTAAAGATTTTAAAGATTCAGGTGCAATTATGGTAGGAGCGG
GCTCTTCATCTTTCCCTCATGAGCGTATGTGGTTTTCGAATTATGGCAGCCGTATTGATGTGTATGGATGGGGAGAAAAC
GTAGATACAACTACAGCAGAGCAAAGTCGAAGTGCTGTAAATCTTTATACATCTAGCTTTAGTGGCACGTCGAGTGCGTC
GCCTATTATTGCCGGAGCAGCGACTTTAGTACAAAGCATTGCGAAAGAAAATTTAGGACAACCATATAGACCGAGTGAAC
TAAGAGCAATATTAAGTAACGAGAACACAGGAACAAAATCTAAAGATCCATATGCAGATCAAATTGGTGTTTTACCAGAT
TTGAAGTCTATACTAGTAAACTTAGGGTATGGACAAAGAAAACCAAACGGTGGGAATGAGTTACAAGTAACAGAAAATGA
ACCAAATAATGAACGTATACAGGCAAATAAAGTTAACTTTCATACACCGATGAAAGGGACACTACATAATAGTGATAGAG
TAGATGTATTTACTTTCCAAATGGACTCACCAGAAAATATTACTATTTCTCTACTAAATGAACAAAACATTGGGATGACA
TGGGTGCTTCATCATGAATCAGATTTAAATAACTATGTAGCATATGGTGAAAATGAAGGAAATGTAGTGAAAGGTACTTA
TCATGCAAAGCCAGGTAAATATTATTTATACGTCTATAAGTATGAGAATAAAGATGGTTCATATGTATTGAATATAAAGT
AA

Upstream 100 bases:

>100_bases
ATTACTATAATCTATTTAGTAGAAAGGGAATATGTTATATAAATAAAATCATTATAAATTAATATAATGATTAATTGTTG
TTAATAGGAGGATTGATGTA

Downstream 100 bases:

>100_bases
ACGAAAGGAACTTCAGATGAAGTTCCTTTAAATTTTTCTAACTCAGGATATGTGAATGATTTTTTAACTTTACTTCTATG
CAATATTTCATACTCATGGA

Product: serine protease, subtilase family

Products: NA

Alternate protein names: 120 kDa collagenase [H]

Number of amino acids: Translated: 613; Mature: 613

Protein sequence:

>613_residues
MKIFQKMCASTVIITTLLGIGGTVNSVHADSIEQQSKLGIDQETDKQIIVKFKADLKFPYEDGIEKQIQSQTNDKVLEDL
LVEYPDVTFTRLFTSVSPEEIEDLEVKAPNNVSTSLLNYYILQTQNGEQKEELVDRLKKSCLIEDVYMKKQEKITPPEVQ
PSSVSLSPNNNPRFKQQGYLEAAPYGINVPFAWEVQGGKGSGITFVDMEYGWLLNHEDLVHQNIELMSGINIDQHVGHGT
SVLGIVSSEDNEVGNIGIAPKAKAKVISQIRDNGQYNTADAILSAVNQLEAGDVLLLEAQASFDGYGDKYLPVEVQPDIF
DAIRAGTDKGVVIIEAGANGWNDLDQFKDRNGKQILNRNSKDFKDSGAIMVGAGSSSFPHERMWFSNYGSRIDVYGWGEN
VDTTTAEQSRSAVNLYTSSFSGTSSASPIIAGAATLVQSIAKENLGQPYRPSELRAILSNENTGTKSKDPYADQIGVLPD
LKSILVNLGYGQRKPNGGNELQVTENEPNNERIQANKVNFHTPMKGTLHNSDRVDVFTFQMDSPENITISLLNEQNIGMT
WVLHHESDLNNYVAYGENEGNVVKGTYHAKPGKYYLYVYKYENKDGSYVLNIK

Sequences:

>Translated_613_residues
MKIFQKMCASTVIITTLLGIGGTVNSVHADSIEQQSKLGIDQETDKQIIVKFKADLKFPYEDGIEKQIQSQTNDKVLEDL
LVEYPDVTFTRLFTSVSPEEIEDLEVKAPNNVSTSLLNYYILQTQNGEQKEELVDRLKKSCLIEDVYMKKQEKITPPEVQ
PSSVSLSPNNNPRFKQQGYLEAAPYGINVPFAWEVQGGKGSGITFVDMEYGWLLNHEDLVHQNIELMSGINIDQHVGHGT
SVLGIVSSEDNEVGNIGIAPKAKAKVISQIRDNGQYNTADAILSAVNQLEAGDVLLLEAQASFDGYGDKYLPVEVQPDIF
DAIRAGTDKGVVIIEAGANGWNDLDQFKDRNGKQILNRNSKDFKDSGAIMVGAGSSSFPHERMWFSNYGSRIDVYGWGEN
VDTTTAEQSRSAVNLYTSSFSGTSSASPIIAGAATLVQSIAKENLGQPYRPSELRAILSNENTGTKSKDPYADQIGVLPD
LKSILVNLGYGQRKPNGGNELQVTENEPNNERIQANKVNFHTPMKGTLHNSDRVDVFTFQMDSPENITISLLNEQNIGMT
WVLHHESDLNNYVAYGENEGNVVKGTYHAKPGKYYLYVYKYENKDGSYVLNIK
>Mature_613_residues
MKIFQKMCASTVIITTLLGIGGTVNSVHADSIEQQSKLGIDQETDKQIIVKFKADLKFPYEDGIEKQIQSQTNDKVLEDL
LVEYPDVTFTRLFTSVSPEEIEDLEVKAPNNVSTSLLNYYILQTQNGEQKEELVDRLKKSCLIEDVYMKKQEKITPPEVQ
PSSVSLSPNNNPRFKQQGYLEAAPYGINVPFAWEVQGGKGSGITFVDMEYGWLLNHEDLVHQNIELMSGINIDQHVGHGT
SVLGIVSSEDNEVGNIGIAPKAKAKVISQIRDNGQYNTADAILSAVNQLEAGDVLLLEAQASFDGYGDKYLPVEVQPDIF
DAIRAGTDKGVVIIEAGANGWNDLDQFKDRNGKQILNRNSKDFKDSGAIMVGAGSSSFPHERMWFSNYGSRIDVYGWGEN
VDTTTAEQSRSAVNLYTSSFSGTSSASPIIAGAATLVQSIAKENLGQPYRPSELRAILSNENTGTKSKDPYADQIGVLPD
LKSILVNLGYGQRKPNGGNELQVTENEPNNERIQANKVNFHTPMKGTLHNSDRVDVFTFQMDSPENITISLLNEQNIGMT
WVLHHESDLNNYVAYGENEGNVVKGTYHAKPGKYYLYVYKYENKDGSYVLNIK

Specific function: Unknown

COG id: COG1404

COG function: function code O; Subtilisin-like serine proteases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PKD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013510
- InterPro:   IPR007280
- InterPro:   IPR002169
- InterPro:   IPR013661
- InterPro:   IPR022409
- InterPro:   IPR000601 [H]

Pfam domain/function: PF01752 Peptidase_M9; PF08453 Peptidase_M9_N; PF00801 PKD; PF04151 PPC [H]

EC number: =3.4.24.3 [H]

Molecular weight: Translated: 67838; Mature: 67838

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00138 SUBTILASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFQKMCASTVIITTLLGIGGTVNSVHADSIEQQSKLGIDQETDKQIIVKFKADLKFPY
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCH
EDGIEKQIQSQTNDKVLEDLLVEYPDVTFTRLFTSVSPEEIEDLEVKAPNNVSTSLLNYY
HCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCEEEECCCCHHHHEEEEE
ILQTQNGEQKEELVDRLKKSCLIEDVYMKKQEKITPPEVQPSSVSLSPNNNPRFKQQGYL
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCE
EAAPYGINVPFAWEVQGGKGSGITFVDMEYGWLLNHEDLVHQNIELMSGINIDQHVGHGT
EECCCCCCCCEEEEEECCCCCCEEEEEECCCEEECCHHHHHHCHHHHHCCCHHHHCCCCC
SVLGIVSSEDNEVGNIGIAPKAKAKVISQIRDNGQYNTADAILSAVNQLEAGDVLLLEAQ
EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEE
ASFDGYGDKYLPVEVQPDIFDAIRAGTDKGVVIIEAGANGWNDLDQFKDRNGKQILNRNS
CCCCCCCCCEEEEEECCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCHHHHCCCC
KDFKDSGAIMVGAGSSSFPHERMWFSNYGSRIDVYGWGENVDTTTAEQSRSAVNLYTSSF
CCCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCEEEEEECCC
SGTSSASPIIAGAATLVQSIAKENLGQPYRPSELRAILSNENTGTKSKDPYADQIGVLPD
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCCC
LKSILVNLGYGQRKPNGGNELQVTENEPNNERIQANKVNFHTPMKGTLHNSDRVDVFTFQ
HHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEE
MDSPENITISLLNEQNIGMTWVLHHESDLNNYVAYGENEGNVVKGTYHAKPGKYYLYVYK
CCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEECCCCCCEEEEEEECCCCEEEEEEEE
YENKDGSYVLNIK
EECCCCCEEEEEC
>Mature Secondary Structure
MKIFQKMCASTVIITTLLGIGGTVNSVHADSIEQQSKLGIDQETDKQIIVKFKADLKFPY
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCH
EDGIEKQIQSQTNDKVLEDLLVEYPDVTFTRLFTSVSPEEIEDLEVKAPNNVSTSLLNYY
HCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCEEEECCCCHHHHEEEEE
ILQTQNGEQKEELVDRLKKSCLIEDVYMKKQEKITPPEVQPSSVSLSPNNNPRFKQQGYL
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCE
EAAPYGINVPFAWEVQGGKGSGITFVDMEYGWLLNHEDLVHQNIELMSGINIDQHVGHGT
EECCCCCCCCEEEEEECCCCCCEEEEEECCCEEECCHHHHHHCHHHHHCCCHHHHCCCCC
SVLGIVSSEDNEVGNIGIAPKAKAKVISQIRDNGQYNTADAILSAVNQLEAGDVLLLEAQ
EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEE
ASFDGYGDKYLPVEVQPDIFDAIRAGTDKGVVIIEAGANGWNDLDQFKDRNGKQILNRNS
CCCCCCCCCEEEEEECCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCHHHHCCCC
KDFKDSGAIMVGAGSSSFPHERMWFSNYGSRIDVYGWGENVDTTTAEQSRSAVNLYTSSF
CCCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCEEEEEECCC
SGTSSASPIIAGAATLVQSIAKENLGQPYRPSELRAILSNENTGTKSKDPYADQIGVLPD
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCCC
LKSILVNLGYGQRKPNGGNELQVTENEPNNERIQANKVNFHTPMKGTLHNSDRVDVFTFQ
HHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEE
MDSPENITISLLNEQNIGMTWVLHHESDLNNYVAYGENEGNVVKGTYHAKPGKYYLYVYK
CCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEECCCCCCEEEEEEECCCCEEEEEEEE
YENKDGSYVLNIK
EECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8282691; 11792842 [H]