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The map label for this gene is ykfC [H]

Identifier: 218904791

GI number: 218904791

Start: 3509536

End: 3511464

Strand: Reverse

Name: ykfC [H]

Synonym: BCAH820_3675

Alternate gene names: 218904791

Gene position: 3511464-3509536 (Counterclockwise)

Preceding gene: 218904792

Following gene: 218904789

Centisome position: 66.22

GC content: 37.34

Gene sequence:

>1929_bases
ATGAATGATAGAACTAAGTCCACGCCAAAGAATAAGAAACTAAGACACAACGAATACTACGGTATCCAAACTTTCTTAGA
TAACTTATACCAGAAGGCAACAAAGAAAAATTCTTTTAAAAATTTAATGCCTATCATTATATCAGATGAAAATATACTCC
TCGCGTTTCGTAATATTAAAGGAAACAAAGGGAGTAAAACAGCAGCTTGTGACAATGTAAACATTAAGGATATTGAGAGA
ATGGAACAAAGCTATTTCTTGAACGAAGTAAAAAGACGCTTTCAAAACTACCAACCGCAGAAAGTAAGGCGCAAGGAAAT
ACCGAAACCCAATGGGAAAACCAGACCTCTGGGAATACCAAGTATGTGGGATAGGATTATCCAACAATGCATCTTACAAG
TAATGGAGCCTATCTGTGAAGCACACTTCTGTAACCGAAGTCATGGATTTCGCCCAAACAGAAGTGCTGAAAATGCTATA
GCAGACGCAACAAAACGGGTAAATCAGCAAAACCTTACATATGTGGTGGATATAGACATTCAGGGATTCTTTGACGAAGT
AAGTCACGTCAAACTCATGCGCCAACTATGGACACTGGGTATTCGTGACAAACAACTACTAGTCATTATCCGGAAAATAT
TGAAAGCGCCAGTGCAACTGCCTAACGGCAAAACGATATTTCCGACCAAAGGTACCCCGCAAGGTGGTATCCTTAGTCCA
CTACTCGCCAATGTTAACCTTAACGAATTTGACTGGTGGATTAGTAATCAATGGGAAACTTTCAAAGCCAAGAAGGTAAA
GCCGAGATTGAAAGATGGGATTTGGAGTAATGACACTGTAACATATTGTCTATCCAAAACATCCAAGATGAAACCAATGT
ATATCGTAAGATACGCAGATGATTTTAAAATCTTTACAAATACACGTAGGAATGCGGAGAAAATTTTCGAAGCAACTCAA
ATGTGGTTAGAAGAACGTCTAAAACTGCCTATCTCAACCGAAAAGTCTAAAGTAACCAATCTGAAAAAGCAACAGAGTGA
ATTCTTAGGTTTCACTCTTAAGGCTGTAAAGAAAGGTAAGAAGAACGGTAACACACGATACATTGCAGTAACACACATCT
CTCCAAAAGCACTGGAAAAAACAAAACAAGATTTAGCMAAACAAGTGAAAAGGATACAGAGAACCCCAAACTCTAATGAA
ACAATTAAGAGAATCAGTATATACAACAGCATGGTCATTGGTAAGCACAACTATTATAAAATAGCAACGCATGCTTCCCT
GGATTTCAGTAAAATGAACCATAGTCTTGGTCACATGATGTATAACAGATTCCCAAAGTCAAAAATTAGAGGAAAAAGCA
ACACAAACGGATACACGAATATAGGGAAATATAAAGGGAAAGACAGAGGTATTAAACCATACCTAAAGTCAAAAGCGATG
AGATTTCTCATGAAATGTCCTATTTTACCAATCTCCTATATTCAACACAAAAAACCGATGATGAAAAAGCAATCTATTAA
CAGATACACCGCAGAAGGACGAGCCCTTATACACAAAAACTTGGCAGAAATAACCGAAGCGGAACTGAAATGGTTAAGAG
AAAACCCAGTTATAAATGAACGGGCAACCATAGAATACAATGATAATCGAATTTCTCTTTATATTGCACAAAAAGGAAGA
TGCAGTGTAACAGGTGAGAAACTCTCGCCTTGGGACATCCACTGTCACCATAAGCGATTATGGAGTGAAACAAGGGATGA
CAGCTACAAAAATCTTACCATCATCAAGCCAAGTGTCCATACACTAATACACGCGACCAATATAGAAACCATAAACCAAT
TCCTCAATAAATTAAAACTCAACGAGGAACAGTTAGGCAAACTTAATAAATTGCGGAAATTAGTCAAAAATGAGGAAATC
TGTATGTAA

Upstream 100 bases:

>100_bases
CACAAGCCTATTTGTAGGAACTGAAATTTCATCTAATCTTGCATGGATTCTGGTAAGACTCAAAAGGTCACCAAATCAAT
ATGAGAGTAGGTGATAGACC

Downstream 100 bases:

>100_bases
TCACAAAATGAAGTGGATATGGAACATGAACAACTAGCGTTGTTTGCTTAGAGCTTATCATTATTAGATGAAAAGAAAAC
TACAATATAGGTGGACCGCG

Product: group II intron reverse transcriptase/maturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MNDRTKSTPKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTAACDNVNIKDIER
MEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQQCILQVMEPICEAHFCNRSHGFRPNRSAENAI
ADATKRVNQQNLTYVVDIDIQGFFDEVSHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSP
LLANVNLNEFDWWISNQWETFKAKKVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTNTRRNAEKIFEATQ
MWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRYIAVTHISPKALEKTKQDLAKQVKRIQRTPNSNE
TIKRISIYNSMVIGKHNYYKIATHASLDFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAM
RFLMKCPILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYNDNRISLYIAQKGR
CSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATNIETINQFLNKLKLNEEQLGKLNKLRKLVKNEEI
CM

Sequences:

>Translated_642_residues
MNDRTKSTPKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTAACDNVNIKDIER
MEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQQCILQVMEPICEAHFCNRSHGFRPNRSAENAI
ADATKRVNQQNLTYVVDIDIQGFFDEVSHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSP
LLANVNLNEFDWWISNQWETFKAKKVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTNTRRNAEKIFEATQ
MWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRYIAVTHISPKALEKTKQDLAKQVKRIQRTPNSNE
TIKRISIYNSMVIGKHNYYKIATHASLDFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAM
RFLMKCPILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYNDNRISLYIAQKGR
CSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATNIETINQFLNKLKLNEEQLGKLNKLRKLVKNEEI
CM
>Mature_642_residues
MNDRTKSTPKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTAACDNVNIKDIER
MEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQQCILQVMEPICEAHFCNRSHGFRPNRSAENAI
ADATKRVNQQNLTYVVDIDIQGFFDEVSHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSP
LLANVNLNEFDWWISNQWETFKAKKVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTNTRRNAEKIFEATQ
MWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRYIAVTHISPKALEKTKQDLAKQVKRIQRTPNSNE
TIKRISIYNSMVIGKHNYYKIATHASLDFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAM
RFLMKCPILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYNDNRISLYIAQKGR
CSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATNIETINQFLNKLKLNEEQLGKLNKLRKLVKNEEI
CM

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=327, Percent_Identity=26.9113149847095, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6226520, Length=322, Percent_Identity=26.3975155279503, Blast_Score=107, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 74877; Mature: 74877

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDRTKSTPKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCEEECCCCEEEEEECCC
GNKGSKTAACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCH
SMWDRIIQQCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
QGFFDEVSHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSP
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHH
LLANVNLNEFDWWISNQWETFKAKKVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYAD
HHHCCCCCHHCCEECCCCHHHHHHCCCCHHHCCCCCCCCEEEEECCCCCCCCEEEEEEEC
DFKIFTNTRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGK
CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KNGNTRYIAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYK
CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCEE
IATHASLDFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAM
EEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RFLMKCPILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINE
HHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
RATIEYNDNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVH
CEEEEECCCEEEEEEECCCCEEECCCCCCCCCEEHHHHHHHHHCCCCCCCEEEEECCCHH
TLIHATNIETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM
HHEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNDRTKSTPKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCEEECCCCEEEEEECCC
GNKGSKTAACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCH
SMWDRIIQQCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
QGFFDEVSHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSP
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHH
LLANVNLNEFDWWISNQWETFKAKKVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYAD
HHHCCCCCHHCCEECCCCHHHHHHCCCCHHHCCCCCCCCEEEEECCCCCCCCEEEEEEEC
DFKIFTNTRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGK
CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KNGNTRYIAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYK
CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCEE
IATHASLDFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAM
EEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RFLMKCPILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINE
HHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
RATIEYNDNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVH
CEEEEECCCEEEEEEECCCCEEECCCCCCCCCEEHHHHHHHHHCCCCCCCEEEEECCCHH
TLIHATNIETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM
HHEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]