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The map label for this gene is yijO [H]

Identifier: 218904422

GI number: 218904422

Start: 3151643

End: 3152470

Strand: Reverse

Name: yijO [H]

Synonym: BCAH820_3306

Alternate gene names: 218904422

Gene position: 3152470-3151643 (Counterclockwise)

Preceding gene: 218904424

Following gene: 218904421

Centisome position: 59.45

GC content: 37.44

Gene sequence:

>828_bases
GTGAAGTTGGACGTGAATGAGTTAGCAGAGTATCTTGCCAATACTCCTTTCCGAGTAGAAGGAGTATATCGTTATGCTAA
AAATCCAGGTGTGCCTTGTGCTGAGTCTACAGATTCTTTCCCAGGATTTGTATTTCCACTTACAGGGAAGACGGAATTTC
AATTTAATGGTACGCCGTATACCCTTTCCCCAGGAAAAGTTATACATGGAGGTGCAAAAATGACATTAGCCCATAAAATG
CTTGGTGAAATAAACTGGGAATATATTCTTGTTTTATATCGGATAAGCAATTCAGAACGAGAAGACTCTGGCTTTACTCA
TCAGCATTTTGAATTGTTAACAGGACAATCTCCTCGTCTTGTCGAATTACTTATGCGTCTTTGGGATGTGTATAATCAGC
GAGGAGGCATTTCGATGTTTCAGACTGAAATGCTATTTCGCGAAGCGTTGAATGAAGCTTTATTAAGTGTTGTCAATAGA
GAAAACAACTATGAATCGCATACTTTATTCGAACGAATATCTAGTTACGTTCATAAATACTATTATAAAGATATTACAAT
ACATACGCTTACAGAACAAAATAATGTTAATCGAAATCGTCTTTCTTACGTGTTTAGAAAGCATGCAGGTATGGGGCCAG
CAGAATATTTAGTGAACTATCGTATAAAGATGGCTCAAAAAATGTTATGTACAAGTGGTGTGCCTGTACAACAAATTGCG
CAGGCTGTTGGAATCGCAGACCCTTTTTATTTTAGTAGAGTTTTCAAGAAGCGAGTTGGCATTTCGCCTACTAAATATCG
CGAGAAGTTCATCAATAATCCATACTAA

Upstream 100 bases:

>100_bases
TTAAGTCGTATGTACTATTTTTAGTTTAGCGTTGCCCAGAATGTACACCAATTAATCTCACGAATTACAAGAAAACTATT
ATTGAAATGAGGCTTGCATT

Downstream 100 bases:

>100_bases
TGTCAACAGGGGTCCATTCTTATTTGAAAATCACTGTTCTATACTTATGGAGAGTTAAAGGAAACATTGGATTGAAAGTA
CTTTCATTGAAATCACTCCT

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTEFQFNGTPYTLSPGKVIHGGAKMTLAHKM
LGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNR
ENNYESHTLFERISSYVHKYYYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLVNYRIKMAQKMLCTSGVPVQQIA
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY

Sequences:

>Translated_275_residues
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTEFQFNGTPYTLSPGKVIHGGAKMTLAHKM
LGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNR
ENNYESHTLFERISSYVHKYYYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLVNYRIKMAQKMLCTSGVPVQQIA
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY
>Mature_275_residues
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTEFQFNGTPYTLSPGKVIHGGAKMTLAHKM
LGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNR
ENNYESHTLFERISSYVHKYYYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLVNYRIKMAQKMLCTSGVPVQQIA
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=282, Percent_Identity=25.531914893617, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786251, Length=138, Percent_Identity=26.8115942028986, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31818; Mature: 31818

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTEFQFNGTPY
CCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCE
TLSPGKVIHGGAKMTLAHKMLGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRL
EECCCCEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCHH
VELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNRENNYESHTLFERISSYVHKY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
YYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLVNYRIKMAQKMLCTSGVPVQQIA
HHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY
HHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTEFQFNGTPY
CCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCE
TLSPGKVIHGGAKMTLAHKMLGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRL
EECCCCEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCHH
VELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNRENNYESHTLFERISSYVHKY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
YYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLVNYRIKMAQKMLCTSGVPVQQIA
HHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY
HHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]