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The map label for this gene is ydbD [H]

Identifier: 218904250

GI number: 218904250

Start: 2965409

End: 2966263

Strand: Direct

Name: ydbD [H]

Synonym: BCAH820_3134

Alternate gene names: 218904250

Gene position: 2965409-2966263 (Clockwise)

Preceding gene: 218904249

Following gene: 218904253

Centisome position: 55.92

GC content: 36.14

Gene sequence:

>855_bases
ATGTTTTATTATAAAGAGGAAATAATTAATATGATTAAGCCAGACAAACCAGATCCAGCTGCTGCAAAAGTTTTACAAGA
AATATTAGGTGGGCATTATGGTGAAATGCGTACAATGATGCAATACTTTTTCCAAAGCTCAAATTTTAGAGGTAAAGAGA
AGCAATATCGTGATTTACTTCGAGGTGTTTTTTTAGAGGAAATAAGCCATGTAGAACTTGTACAACATACAATTAATCAA
CTATTAACTGGATCTGGTGAACCTACGCCTGGAAATGCTGGTATTGACACAGCACCACTTGACGAAGCGGTTAAACATGC
AAATCCTCATCACTTTATTGTAGGTGCTCAAAGTTCATTACCTGTTGATGCAGCTGGCAATCCATGGAATGGATCTTGGG
TATATAGTCATGGAAACTTAATTAGCGATTTACTAGATAATGTCGTACTTGAATCTACAGGTGTACTTCAAAAAACTAGA
ATTTATGAAATGAGTTCTAATCAAACCTTTAGAGAAACACTTGCATTTTTAATTGTACGTGATAATGCACATCAAAATGC
TTTTGCAAAAGCTTTAGAGACACTTGGGGTTGAATGGGGCAAACTCTTCCCTGTGCCGAACTATGATATTAATAAATACC
CAGAGTGCAAAAAGTATGTAGACATGGGATTCCATAACGCACAATTTAATTTCAGCTTAGATCCAACAAGAATGGGAGAA
ATATTCCAAGGTGAATCACCAAGTAGAAACAAAGGAACATTAACAGTAACTGACCCGCCAAAAGGTTTTCCTGTACCAGA
GCTTCCTGAAATGCCAAATGAGCATAGTCCCGGATTAAAAGATATGGATTTTTAA

Upstream 100 bases:

>100_bases
TCGAGATAGTAATTAATTGGTAAAAAAATGAATTTAAGTATTAAGCAACCAATTAGCGGACACGATAACAATGTTAACTA
ACTTAAAAGAGGTGTACTTC

Downstream 100 bases:

>100_bases
GATCATATTTCTGCTCCTCTTAATTTTGTTTCTATGAACCATTAAACGCCACTGTATACTTATAACCTCCCTACTTCTAT
TCACATATAACATCCCTATA

Product: catalase, Mn-containing

Products: NA

Alternate protein names: General stress protein 80; GSP80 [H]

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYRDLLRGVFLEEISHVELVQHTINQ
LLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQSSLPVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQKTR
IYEMSSNQTFRETLAFLIVRDNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECKKYVDMGFHNAQFNFSLDPTRMGE
IFQGESPSRNKGTLTVTDPPKGFPVPELPEMPNEHSPGLKDMDF

Sequences:

>Translated_284_residues
MFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYRDLLRGVFLEEISHVELVQHTINQ
LLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQSSLPVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQKTR
IYEMSSNQTFRETLAFLIVRDNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECKKYVDMGFHNAQFNFSLDPTRMGE
IFQGESPSRNKGTLTVTDPPKGFPVPELPEMPNEHSPGLKDMDF
>Mature_284_residues
MFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYRDLLRGVFLEEISHVELVQHTINQ
LLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQSSLPVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQKTR
IYEMSSNQTFRETLAFLIVRDNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECKKYVDMGFHNAQFNFSLDPTRMGE
IFQGESPSRNKGTLTVTDPPKGFPVPELPEMPNEHSPGLKDMDF

Specific function: Unknown

COG id: COG3546

COG function: function code P; Mn-containing catalase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the manganese catalase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007760
- InterPro:   IPR012347
- InterPro:   IPR009078 [H]

Pfam domain/function: PF05067 Mn_catalase [H]

EC number: =1.11.1.6 [H]

Molecular weight: Translated: 31948; Mature: 31948

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYRDLL
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RGVFLEEISHVELVQHTINQLLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQSSL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCC
PVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQKTRIYEMSSNQTFRETLAFLIVR
CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHEEECCCCCHHHHHHHHHEEE
DNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECKKYVDMGFHNAQFNFSLDPTRMGE
CCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHHHHH
IFQGESPSRNKGTLTVTDPPKGFPVPELPEMPNEHSPGLKDMDF
HHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYRDLL
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RGVFLEEISHVELVQHTINQLLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQSSL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCC
PVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQKTRIYEMSSNQTFRETLAFLIVR
CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHEEECCCCCHHHHHHHHHEEE
DNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECKKYVDMGFHNAQFNFSLDPTRMGE
CCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHHHHH
IFQGESPSRNKGTLTVTDPPKGFPVPELPEMPNEHSPGLKDMDF
HHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]