Click here to switch to the map view.

The map label for this gene is ykgA [C]

Identifier: 218904185

GI number: 218904185

Start: 2906598

End: 2907488

Strand: Reverse

Name: ykgA [C]

Synonym: BCAH820_3069

Alternate gene names: 218904185

Gene position: 2907488-2906598 (Counterclockwise)

Preceding gene: 218904186

Following gene: 218904184

Centisome position: 54.83

GC content: 34.12

Gene sequence:

>891_bases
ATGGAGAATAAACAAAGTAGAAATGAGTATTTACAGCGCATATACAAAGTACAAAATTATATAGAATTACACATAAATGA
TTCACTATCCATTGAAGAGCTAGCGGATATAGCAGGATTTTCAAAGTATCATTTTCATAGAATTTTTAAAGGGATAGTAG
ATGAACCATTATCTCGGTATGTAAACCGATTGAAACTGGAAAGGGCAACAAACCTTCTTACATACCGTTCGGATATGACG
ATTACTGATATCGCTTACCATTTTGGTTTCACAGATTCGGCAGTTTTCTCCCGTACATTTAAAAATTATTACGGAGTAAG
TCCGTCTCAATATCGAAACGACAATAGCAAGAATTGCAAAGACGTAAGAAGAACTTCTCAATACAATGAATGTAAGAAGG
TTCGAGGGAATGTTGAAATTGTAGCAGCAGACAATATAAACGTCGCATACATAAGGCATATCGGTACATATGAAGAGTTA
ACTATAGCTTTTCCGAAAATGATAGAGAAACTATTTCATTACGCAGCCAAGCAAAACTATCATGTATTTAAGGATACGAA
AGTATTAACCATTTACCACGATCATCATGAATTTACGGAGGACAATCATTTAAGAACAAGTTTATGTATAACAATTCCAG
GTGAATCTGCAATAGAAACGAACGACATTGGAATAATGGTAATACCTTCAGGCAAGTATGCAGTAGGACATTTTGAAATA
TTCCAAGATGAATATAAAAGAGCATGGGACTTTATATATGGTGAGTGGCTGCCAAATAGCGGATATAAACCGAGAGACTC
ATATCCTTTTGAAGTATATAGAAATGATCCAAAGCAGCATCCAAAGCATAAACATATAGTTGATATATATGTACCTATCG
AACCTTTTTAA

Upstream 100 bases:

>100_bases
AAATTATGACGGGAACGGCGGTAGTAGAGTTTTATTTTTGAAACATGTGTAAAAGTAGGCTAGCACAAAGTTAGCCTTTT
TGTTGTGAGGAGCTAGAAGT

Downstream 100 bases:

>100_bases
TTATAGGTTAAAGGGGAAGGAATAATGAAAACTGCTGAAAAGTTAGATCAGATTATAAAAGAAGAATATGAAAATATGAA
TGGTATGTTAGTAGTGCAGA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRYVNRLKLERATNLLTYRSDMT
ITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRRTSQYNECKKVRGNVEIVAADNINVAYIRHIGTYEEL
TIAFPKMIEKLFHYAAKQNYHVFKDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF

Sequences:

>Translated_296_residues
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRYVNRLKLERATNLLTYRSDMT
ITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRRTSQYNECKKVRGNVEIVAADNINVAYIRHIGTYEEL
TIAFPKMIEKLFHYAAKQNYHVFKDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF
>Mature_296_residues
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRYVNRLKLERATNLLTYRSDMT
ITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRRTSQYNECKKVRGNVEIVAADNINVAYIRHIGTYEEL
TIAFPKMIEKLFHYAAKQNYHVFKDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF

Specific function: Unknown

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=102, Percent_Identity=32.3529411764706, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34993; Mature: 34993

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRY
CCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VNRLKLERATNLLTYRSDMTITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCK
HHHHHHHHHHHEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHH
DVRRTSQYNECKKVRGNVEIVAADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNY
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
HVFKDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
EEEECCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEECCEEEEEECCCCEEEHHHHH
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRY
CCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VNRLKLERATNLLTYRSDMTITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCK
HHHHHHHHHHHEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHH
DVRRTSQYNECKKVRGNVEIVAADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNY
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
HVFKDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
EEEECCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEECCEEEEEECCCCEEEHHHHH
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]