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The map label for this gene is des [H]

Identifier: 218904114

GI number: 218904114

Start: 2836486

End: 2837517

Strand: Reverse

Name: des [H]

Synonym: BCAH820_2998

Alternate gene names: 218904114

Gene position: 2837517-2836486 (Counterclockwise)

Preceding gene: 218904115

Following gene: 218904113

Centisome position: 53.51

GC content: 35.08

Gene sequence:

>1032_bases
ATGACATTAGAAAAAACTAAAAATTTAAAAAAACAAGTTGCCCCTTATGAAAAATCAACAATAAAAAAAAGTGTGTGGCA
ACTTATTAACACAGTCGTGCCGTTTATTATTTTATGGTACCTTGCTTATAAAAGTTTGTCCGTTTCTTATCTGTTAGCAG
TAGTTCCATCTCTGTTAGCTGCTGGTTTTATGACACGAATTTTCATTATTTTTCATGATTGTACCCATTATTCATTCTTT
AAAAGTCGACGTGCAAATAGAATAGTAGGGACATGTATGGGTGTGTTAACGTTATTCCCATTTGATCAATGGGGGCATGA
TCATGCGATTCATCACGCTACAAGTGGTAATTTAGATAAGAGAGGTACAGGAGATATTTGGACGCTTACAGTGGATGAAT
ATGTAGCTGCGCCACTTAGACTTCGTTTAGCATATCGTTTATATCGCAATCCATTCGTTATGTTTGGGTTAGGTCCGATT
TATGTATTCTTGCTTAAAAATAGATTTAACCGAAAAGGTGCAAGACAGAAAGAACGTATGAATACGTATTTGACGAATAT
TATAATTGTTGCCGTAGTAGCTATACTTTGCTGGGCAATAGGATGGCAATCGTTCTTATTAGTACATGGTACGATATTCT
TAATTGCAGGTTCAGTAGGTATTTGGCTGTTTTACGTACAGCACACATTCGAGGATTCTTATTTTGAAGAAGATAAAGAT
TGGGAATATGTGAAAGCGGCCGTAGAGGGAAGTTCATTTTATAAACTTCCAAAAATCTTGCAATTCCTAACTGGTAATAT
TGGATTCCATCATGTTCACCATTTAAGCCCAAGAGTACCAAACTATAAACTAGAAGAGGCACACAATAATACGCTTCCGT
TAAAAAATGTACCAACGATTACACTTGCTACAAGCTTGCGTTCACTTCGTTTCCGTCTTTGGGATGAGAAAAGTAACAAT
TTTGTTAGCTTTAAAGAAGTCAAAAATATAATTAAAAATAATGTTTCTGTCCGGGTGAAATCGGAACTATAA

Upstream 100 bases:

>100_bases
TTATAGTATATAATAATATTTATTACATCTACTTTTAACACCTGATACTAATAGTATGCTATAATATGAATTAGCAACAT
AAAGGAAGGGAATTAGAAAA

Downstream 100 bases:

>100_bases
ATTCATCGGCTATAAAACTCCCCTTAATCATTATCGATGTAAGGGGAGTTTTTGTTATGTATAACTGATATCGGGGACGT
GGAAAAATACATGTGTAGAT

Product: fatty acid desaturase

Products: NA

Alternate protein names: Delta(5) acyl-lipid desaturase; Delta(5) desaturase [H]

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MTLEKTKNLKKQVAPYEKSTIKKSVWQLINTVVPFIILWYLAYKSLSVSYLLAVVPSLLAAGFMTRIFIIFHDCTHYSFF
KSRRANRIVGTCMGVLTLFPFDQWGHDHAIHHATSGNLDKRGTGDIWTLTVDEYVAAPLRLRLAYRLYRNPFVMFGLGPI
YVFLLKNRFNRKGARQKERMNTYLTNIIIVAVVAILCWAIGWQSFLLVHGTIFLIAGSVGIWLFYVQHTFEDSYFEEDKD
WEYVKAAVEGSSFYKLPKILQFLTGNIGFHHVHHLSPRVPNYKLEEAHNNTLPLKNVPTITLATSLRSLRFRLWDEKSNN
FVSFKEVKNIIKNNVSVRVKSEL

Sequences:

>Translated_343_residues
MTLEKTKNLKKQVAPYEKSTIKKSVWQLINTVVPFIILWYLAYKSLSVSYLLAVVPSLLAAGFMTRIFIIFHDCTHYSFF
KSRRANRIVGTCMGVLTLFPFDQWGHDHAIHHATSGNLDKRGTGDIWTLTVDEYVAAPLRLRLAYRLYRNPFVMFGLGPI
YVFLLKNRFNRKGARQKERMNTYLTNIIIVAVVAILCWAIGWQSFLLVHGTIFLIAGSVGIWLFYVQHTFEDSYFEEDKD
WEYVKAAVEGSSFYKLPKILQFLTGNIGFHHVHHLSPRVPNYKLEEAHNNTLPLKNVPTITLATSLRSLRFRLWDEKSNN
FVSFKEVKNIIKNNVSVRVKSEL
>Mature_342_residues
TLEKTKNLKKQVAPYEKSTIKKSVWQLINTVVPFIILWYLAYKSLSVSYLLAVVPSLLAAGFMTRIFIIFHDCTHYSFFK
SRRANRIVGTCMGVLTLFPFDQWGHDHAIHHATSGNLDKRGTGDIWTLTVDEYVAAPLRLRLAYRLYRNPFVMFGLGPIY
VFLLKNRFNRKGARQKERMNTYLTNIIIVAVVAILCWAIGWQSFLLVHGTIFLIAGSVGIWLFYVQHTFEDSYFEEDKDW
EYVKAAVEGSSFYKLPKILQFLTGNIGFHHVHHLSPRVPNYKLEEAHNNTLPLKNVPTITLATSLRSLRFRLWDEKSNNF
VSFKEVKNIIKNNVSVRVKSEL

Specific function: Catalyzes the introduction of a cis-double bond at the delta(5) position of existing saturated fatty acids attached to membrane phospholipids. It is not strictly specific for palmitic acid (C16) but can also accept C14 as well as C18 species to yield unsa

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: 1.14.99.-

Molecular weight: Translated: 39699; Mature: 39568

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCEEEEECCC
>Mature Secondary Structure 
TLEKTKNLKKQVAPYEKSTIKKSVWQLINTVVPFIILWYLAYKSLSVSYLLAVVPSLLA
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9555904; 9384377 [H]