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The map label for this gene is rtcB [H]

Identifier: 218904113

GI number: 218904113

Start: 2835024

End: 2836211

Strand: Reverse

Name: rtcB [H]

Synonym: BCAH820_2997

Alternate gene names: 218904113

Gene position: 2836211-2835024 (Counterclockwise)

Preceding gene: 218904114

Following gene: 218904111

Centisome position: 53.49

GC content: 34.18

Gene sequence:

>1188_bases
ATGTTGAAATTACAAGGAAAATACAATGAAGCGAAAGTATTTACGAATAACGTTGATGAGACTGCGACAGGGCAGATTAT
TGATCTTTGTAACCAAGAATTTGTAAAGGATAGTCAAATTCGTATTATGCCAGATACACATGCAGGAGCAGGTTGTACGA
TTGGGACAACAATGACAATCCAAGATAAAATTGTTCCTAATCTTGTAGGGGTAGATATTGGGTGTGGGATGGAAGTTGTT
GTAATTGATAAGAAAAAAGAAGAAATTAATTTCGATTACTTAGACGAAACAATTCGTAAATTCGTTCCAAGTGGTTTTCG
TATACGAGATAAGGAACATCGATTCTCAAAAATGATTGATTTTGATGGTGTGAGAGCTCCATTTACATTACAACGCGCTC
AAAAAAGTATTGGTACACTTGGGGGAGGAAATCATTTTGTCGAATTGAATGAGGACGATAAAGGTAATGTATATATTGTC
ATTCATAGTGGTTCGCGTAATTTAGGTAAGCAAATTGCAGAGTATTACCAAAACTTCGCATATGAACAACTTATTGATGT
TACATCAATAAAAGATGATATTATTAAGAGGTTAACTGAAGAGGGAAGAGCAAAAGAAATACAAGAAACTTTACGTGGAA
TTCAGAAGCCAAAGATTCGTAAAGAACTAGCTTATTTAGAAGGGCAAGGGTTCAAAGATTATATGAATGACATGAATATT
GCCCAAAAATATGCGGCGTTAAATCGTAAAGCAATGATTGATGAAATTGTTACGAAAATGGACTGGAAAATTACAGATCA
ATTTACTACAATACATAACTATATTGACATAGAAAATATGATTCTACGAAAAGGTGCTATTTCAGCTCAGAAAGATGAAC
GAGTCATTATTCCAATTAACATGAGAGATGGTTCAATTATTGCATTTGGTAAAGGGAATCCAGACTGGAATTTTTCTGGT
CCGCATGGGGCAGGACGTATCATGAGTCGTAAGAAGGCTAAAGAATCATTGAGTCTAGAGGAATTTCAAAATACGATGAC
AGAGGTTTGGACTACATCAGTAGTAGAAAGTACAATTGACGAGGCACCAATGGTATATAAGCCAATGGATGAAATTATAG
AAAATACAAAAGAAACGATAGATATAAAACACATTATTAAGCCGTTGTATAATTTTAAAGCGAATTAG

Upstream 100 bases:

>100_bases
TCGTGCATATATAATGGAAAGCAGAGGGTGGATGAGAGTAATGATAAGAACAGAAACAACGTAATAAAATAATTCTTTCA
AAAGGAAGGGGAAATGAAAG

Downstream 100 bases:

>100_bases
AAGGATAAAAGACCGCACATGAAGTAAAAGCCATGTGCGGTCTTTTATATAAGCAGAGTATTATATAGTCTCGCTAATTT
TATTTTCACTAGAAGTGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTIQDKIVPNLVGVDIGCGMEVV
VIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMIDFDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIV
IHSGSRNLGKQIAEYYQNFAYEQLIDVTSIKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDWNFSG
PHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTIDEAPMVYKPMDEIIENTKETIDIKHIIKPLYNFKAN

Sequences:

>Translated_395_residues
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTIQDKIVPNLVGVDIGCGMEVV
VIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMIDFDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIV
IHSGSRNLGKQIAEYYQNFAYEQLIDVTSIKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDWNFSG
PHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTIDEAPMVYKPMDEIIENTKETIDIKHIIKPLYNFKAN
>Mature_395_residues
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTIQDKIVPNLVGVDIGCGMEVV
VIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMIDFDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIV
IHSGSRNLGKQIAEYYQNFAYEQLIDVTSIKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDWNFSG
PHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTIDEAPMVYKPMDEIIENTKETIDIKHIIKPLYNFKAN

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Escherichia coli, GI2367224, Length=420, Percent_Identity=31.6666666666667, Blast_Score=173, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24585217, Length=437, Percent_Identity=21.9679633867277, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44996; Mature: 44996

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTI
CEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECEEEEE
QDKIVPNLVGVDIGCGMEVVVIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMID
HHHHCCHHHCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHC
FDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIVIHSGSRNLGKQIAEYYQNFA
CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
YEQLIDVTSIKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPIN
HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
MRDGSIIAFGKGNPDWNFSGPHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTID
ECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
EAPMVYKPMDEIIENTKETIDIKHIIKPLYNFKAN
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTI
CEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECEEEEE
QDKIVPNLVGVDIGCGMEVVVIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMID
HHHHCCHHHCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHC
FDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIVIHSGSRNLGKQIAEYYQNFA
CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
YEQLIDVTSIKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPIN
HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
MRDGSIIAFGKGNPDWNFSGPHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTID
ECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
EAPMVYKPMDEIIENTKETIDIKHIIKPLYNFKAN
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]