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The map label for this gene is rocC [H]

Identifier: 218904112

GI number: 218904112

Start: 2833539

End: 2834963

Strand: Direct

Name: rocC [H]

Synonym: BCAH820_2996

Alternate gene names: 218904112

Gene position: 2833539-2834963 (Clockwise)

Preceding gene: 218904108

Following gene: 218904116

Centisome position: 53.44

GC content: 36.42

Gene sequence:

>1425_bases
ATGTCGCAAGTAAACAATACAAACAATGAATTAAAACGTACGATGAAAAGTAGACACTTATTCATGATTGCACTCGGTGG
TGTGATTGGAACGGGTTTATTTAACGGATCTGGCTTTATTATAAGTCAAGCTGGACCTGGTGGATCCGTACTTGCCTTTA
TGGCTGGTGGATTATTAATGTATTTCGTTATGCTTTGTCTTGGTGAACTCGCTGTAGCTATGCCTGTTTCAGGTTCTTTT
CAGGAATATGCAACTAAGTTCATCAATCCTGCAACTGGATTTACAATCGGCTGGTTATATTGGTTAAGCTGGGCAAATAC
GACCGGTCTTGAATTTACAACTGCTGGCATTACAATGCAGCGCTGGTTCCCTGATATTCCTGTTTGGGTTTGGTGTTTAA
TATTTGGTGTTACAATCTTCACGATTAATGCATTATCTGCTCGTAGTTATGCAGAAACAGAATTTTGGTTTTCAAGTATA
AAAGTATCTGCCATTATAGCTTTTATTATTCTTGGCGGCGCCGCTATGTTCGGTTTAATTGATTTAAAAGGCGACGAACC
AGCCCCATTATTATCAAATTTCGTAAATCATGGCGGTTTATTCCCAAATGGACTTGCAGCTATTCTATTAACGATGGTTA
CAGTTAATTATTCCTTCCAAGGTACAGAACTTGTCGGAATCGCAGCAGGTGAAAGTGAAGATCCAGCAAAAACTTTACCT
CGTTCTATTAGAAATATTATATGGCGTACGATGTTTTTCTTCGTCTTAGCAATCTTTGTTCTTGTTGCTTTAATTCCTTG
GGAAGAAGCAGGATTAACAAAAAGCCCGTTCGTTGCTGTTTTTGATAATATCGGTATTCCATATGCAGCTGATATTATGA
ACTTTGTTATTCTTACAGCTGTTCTTTCTGTCGCAAACTCTGGACTATATGCCGCAACTCGCATGCTTTGGTCATTATCA
AAAAACGAAATGGCTCCGGCCTTTCTAAAGAAATTATCTTCACGAGGAATACCTTTAAACGCTTTAATTTTGACAATTTC
TATTTCTGCTTTTTCTCTTTTAACAAGCGTCGTAGCTGCTGAAACGGTTTACTTATGGCTCATTTCCATTTCTGGAGTTA
TAACAATCATTGTTTGGATGTCAATTTGTATTTCTCAATTCTTTTTCCGTAAACATTATGTAGCAGACGGTGGAAGATTA
GAAGACTTAAAATTTAAAACGCCACTTTATCCACTTGTACCAATTCTTGGTTTTGGATTGTATGGCATTATATTAGTAAG
TCTTATCTTTATCCCAGATCAAAGACTAGGCATTTATTGTACTGTACCATTTATCATCTTTTGCTACACTTACTATCACT
TTAAAGTGAAGAAAAGAATTTCTACTAACACTTCTAGTGAAAATAAAATTAGCGAGACTATATAA

Upstream 100 bases:

>100_bases
TTATCTGAAAATTATAACAAGATTTCACATCACGGAATACATTCCATAATACGGAAAAACATCAAAATTTATTCTATCAA
CTACGAAAGTGAGGAAAACA

Downstream 100 bases:

>100_bases
TACTCTGCTTATATAAAAGACCGCACATGGCTTTTACTTCATGTGCGGTCTTTTATCCTTCTAATTCGCTTTAAAATTAT
ACAACGGCTTAATAATGTGT

Product: amino acid permease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MSQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPVSGSF
QEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFWFSSI
KVSAIIAFIILGGAAMFGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLP
RSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFVILTAVLSVANSGLYAATRMLWSLS
KNEMAPAFLKKLSSRGIPLNALILTISISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICISQFFFRKHYVADGGRL
EDLKFKTPLYPLVPILGFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI

Sequences:

>Translated_474_residues
MSQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPVSGSF
QEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFWFSSI
KVSAIIAFIILGGAAMFGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLP
RSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFVILTAVLSVANSGLYAATRMLWSLS
KNEMAPAFLKKLSSRGIPLNALILTISISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICISQFFFRKHYVADGGRL
EDLKFKTPLYPLVPILGFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI
>Mature_473_residues
SQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPVSGSFQ
EYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFWFSSIK
VSAIIAFIILGGAAMFGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLPR
SIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFVILTAVLSVANSGLYAATRMLWSLSK
NEMAPAFLKKLSSRGIPLNALILTISISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICISQFFFRKHYVADGGRLE
DLKFKTPLYPLVPILGFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI

Specific function: Putative transport protein involved in arginine degradative pathway. Probably transports arginine or ornithine [H]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=467, Percent_Identity=52.03426124197, Blast_Score=497, Evalue=1e-142,
Organism=Escherichia coli, GI1788480, Length=416, Percent_Identity=46.875, Blast_Score=378, Evalue=1e-106,
Organism=Escherichia coli, GI1786789, Length=455, Percent_Identity=37.5824175824176, Blast_Score=307, Evalue=8e-85,
Organism=Escherichia coli, GI1789017, Length=455, Percent_Identity=38.2417582417582, Blast_Score=293, Evalue=1e-80,
Organism=Escherichia coli, GI1786302, Length=457, Percent_Identity=34.3544857768052, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI48994972, Length=443, Percent_Identity=36.117381489842, Blast_Score=282, Evalue=4e-77,
Organism=Escherichia coli, GI1786602, Length=465, Percent_Identity=34.4086021505376, Blast_Score=258, Evalue=4e-70,
Organism=Escherichia coli, GI87081915, Length=473, Percent_Identity=33.1923890063425, Blast_Score=254, Evalue=7e-69,
Organism=Escherichia coli, GI1790653, Length=461, Percent_Identity=33.4056399132321, Blast_Score=249, Evalue=4e-67,
Organism=Escherichia coli, GI87081869, Length=238, Percent_Identity=26.890756302521, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320772, Length=441, Percent_Identity=35.1473922902494, Blast_Score=265, Evalue=1e-71,
Organism=Saccharomyces cerevisiae, GI6324061, Length=427, Percent_Identity=32.5526932084309, Blast_Score=244, Evalue=2e-65,
Organism=Saccharomyces cerevisiae, GI6324553, Length=406, Percent_Identity=35.2216748768473, Blast_Score=228, Evalue=2e-60,
Organism=Saccharomyces cerevisiae, GI6324059, Length=425, Percent_Identity=33.1764705882353, Blast_Score=227, Evalue=3e-60,
Organism=Saccharomyces cerevisiae, GI6322892, Length=412, Percent_Identity=35.4368932038835, Blast_Score=219, Evalue=5e-58,
Organism=Saccharomyces cerevisiae, GI6319824, Length=422, Percent_Identity=30.8056872037915, Blast_Score=211, Evalue=2e-55,
Organism=Saccharomyces cerevisiae, GI6320717, Length=424, Percent_Identity=30.6603773584906, Blast_Score=211, Evalue=3e-55,
Organism=Saccharomyces cerevisiae, GI6321629, Length=418, Percent_Identity=32.7751196172249, Blast_Score=209, Evalue=7e-55,
Organism=Saccharomyces cerevisiae, GI6320251, Length=421, Percent_Identity=31.1163895486936, Blast_Score=198, Evalue=2e-51,
Organism=Saccharomyces cerevisiae, GI6324990, Length=415, Percent_Identity=30.6024096385542, Blast_Score=195, Evalue=1e-50,
Organism=Saccharomyces cerevisiae, GI6319543, Length=418, Percent_Identity=28.4688995215311, Blast_Score=194, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6319542, Length=441, Percent_Identity=30.8390022675737, Blast_Score=194, Evalue=3e-50,
Organism=Saccharomyces cerevisiae, GI6324924, Length=488, Percent_Identity=28.6885245901639, Blast_Score=193, Evalue=5e-50,
Organism=Saccharomyces cerevisiae, GI6321053, Length=419, Percent_Identity=28.4009546539379, Blast_Score=191, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6322967, Length=457, Percent_Identity=31.0722100656455, Blast_Score=189, Evalue=8e-49,
Organism=Saccharomyces cerevisiae, GI6324981, Length=505, Percent_Identity=30.6930693069307, Blast_Score=172, Evalue=8e-44,
Organism=Saccharomyces cerevisiae, GI6319608, Length=433, Percent_Identity=24.9422632794457, Blast_Score=155, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6320364, Length=94, Percent_Identity=39.3617021276596, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 52093; Mature: 51962

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAGGLLM
CCCCCCCHHHHHHHHHHCCEEEEEHHHHHHHCEECCCCEEEECCCCCCHHHHHHHHHHHH
YFVMLCLGELAVAMPVSGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQ
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHH
RWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFWFSSIKVSAIIAFIILGGAAMFGLI
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
DLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLP
EECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
RSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFVILTA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
VLSVANSGLYAATRMLWSLSKNEMAPAFLKKLSSRGIPLNALILTISISAFSLLTSVVAA
HHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHH
ETVYLWLISISGVITIIVWMSICISQFFFRKHYVADGGRLEDLKFKTPLYPLVPILGFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
YGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC
>Mature Secondary Structure 
SQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAGGLLM
CCCCCCHHHHHHHHHHCCEEEEEHHHHHHHCEECCCCEEEECCCCCCHHHHHHHHHHHH
YFVMLCLGELAVAMPVSGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQ
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHH
RWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFWFSSIKVSAIIAFIILGGAAMFGLI
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
DLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLP
EECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
RSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFVILTA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
VLSVANSGLYAATRMLWSLSKNEMAPAFLKKLSSRGIPLNALILTISISAFSLLTSVVAA
HHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHH
ETVYLWLISISGVITIIVWMSICISQFFFRKHYVADGGRLEDLKFKTPLYPLVPILGFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
YGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]