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The map label for this gene is lsrR [H]

Identifier: 218904092

GI number: 218904092

Start: 2813536

End: 2814468

Strand: Direct

Name: lsrR [H]

Synonym: BCAH820_2976

Alternate gene names: 218904092

Gene position: 2813536-2814468 (Clockwise)

Preceding gene: 218904089

Following gene: 218904093

Centisome position: 53.06

GC content: 38.69

Gene sequence:

>933_bases
ATGACTCAGCTGAACTTTGAAGAGAATTTATTAACGAAAGTAGCTTGGTACTATTATAAGGACCAATTAACACAACAGGA
GATCGCTTCACTTCTTCATATTTCAAGAAATAAAGTCGTCCGGTTATTAGATAAGGCGCGGAGTGAAGGTATCGTTACAT
TTCACGTAAAAGGGACTGGTTTGCACTGTTTAAGTATTGAGCGTGACCTAATGAAAAAATTCCACTTAAAAGATGCTTTT
ATTATCCCGACCCCATTAAACAATTATCACGATTCTCTCGGAAAAGCTGCTGCACAATATTTAGAAACTCAGCTCCAGCA
AGGCGATTTACTCGGTATTGGCTGGGGAGAAACAATTAGCAAAATGCTAGAAAACATTCATTTCGAAAGTTCTATTAATC
TCTCAATCGTAACGTTAACAGGCGGAGTAAATCACTATCTCCCGAGAAAACAAAACTATTTACACTACATGCAAGGTGAT
CTTCACATTATCCCTACGCCGTTTCTAGCGTCTACAACCGAAATGGCACAAAGTATTTTATCAGAACCGAGTGTAAAAGA
TATGCTTCATGTCGCTTCACTTGCTCATACGGCTGTTGTCGGTATTGGAGGATTGTCTCAAGAGGCTACGATTGTAAAAG
AAGAAAAATTAACTTTACGTGAGATGACATATATTCGTAGTCAAAACGGTGCTGGCGATATTTTAGGACAGTTTTATGAT
ACAAATGGCGATTTATTAGAGCTCTCGCATCACAATCGTCTAATTGGCACGCCCCTCTCTGTTTTGCGCAATATGAAGCA
TGTCGTCGGTGTTGCTGGAGGTACTGAAAAGATAGATGCAATTTATGGTGCCTTAAAAGGAAAGTTTATTCATACATTAA
TTACCGATGAGGAAACTGCCCTTTCCTTATTACGAAAGGATGGTGATTGTTAA

Upstream 100 bases:

>100_bases
ACACTTTTTTCTACGTACTATTAATCGCTTCAACTGGAATAAACAAAATATATGGTACATATGTTTAAGCTGTGGTCAAT
TGTTGAAAGGGATGAAAAGT

Downstream 100 bases:

>100_bases
TGTCCAATTTATTAGCTTTCGATGCTGGTACAGGAAGTATTCGAGCAGTTCTTTTTGATTTACATGGTAATCAAATTGCA
GTAAGTCAAAAAGAATGGAT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKKFHLKDAF
IIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGD
LHIIPTPFLASTTEMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYD
TNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDGDC

Sequences:

>Translated_310_residues
MTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKKFHLKDAF
IIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGD
LHIIPTPFLASTTEMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYD
TNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDGDC
>Mature_309_residues
TQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKKFHLKDAFI
IPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDL
HIIPTPFLASTTEMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYDT
NGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDGDC

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=304, Percent_Identity=38.4868421052632, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI87082414, Length=314, Percent_Identity=26.1146496815287, Blast_Score=128, Evalue=6e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34550; Mature: 34419

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTG
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
LHCLSIERDLMKKFHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETIS
EEEEHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHH
KMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDLHIIPTPFLASTTEMAQSIL
HHHHHCCCCCCCCEEEEEEECCCHHCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHH
SEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEC
TNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETA
CCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCHHH
LSLLRKDGDC
HHHHHCCCCC
>Mature Secondary Structure 
TQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTG
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
LHCLSIERDLMKKFHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETIS
EEEEHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHH
KMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDLHIIPTPFLASTTEMAQSIL
HHHHHCCCCCCCCEEEEEEECCCHHCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHH
SEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEC
TNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETA
CCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCHHH
LSLLRKDGDC
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA