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The map label for this gene is lsrD [H]

Identifier: 218904088

GI number: 218904088

Start: 2809936

End: 2810583

Strand: Reverse

Name: lsrD [H]

Synonym: BCAH820_2972

Alternate gene names: 218904088

Gene position: 2810583-2809936 (Counterclockwise)

Preceding gene: 218904090

Following gene: 218904087

Centisome position: 53.0

GC content: 40.74

Gene sequence:

>648_bases
ATGACAGATGTAGAACCACTCGTCGTTACACTCGGCACGATGTTTTTATACGGAGGAATTGCACTCGTCATTTCAGGAGG
GGCAGGTGCTTCTGGGTATGAAGGGATAAGTGGTTTACCTGACGCATTTGTACAACTGGCAAGCGGTAGTTTTATAGGAA
TACCAAATTTATTATGGCTACTGATCGTATTAACAGTTTTATGTGCTGTATTATTTCACCGAACTATATACGGACGCCAT
GTAAAATTAACAGGTGCGAACGAAAATGCAGCAAAATACACCGGGATTAAGACGAAGAAAGTAGTCATCATCGCTTACAT
GCTTTCCGGGTTAGGAGGTGGATTAGGGGGGACTTTCTTAACTGCCTATTTCGGTTCCGCACGTGCTGATATGGGAAGTG
AAACAATTTTACCAATCATTACGGCAGTCGTATTAGGCGGGACACTTATTACAGGGGGAAAAGGAAGCATTATCGGTACT
GTACTGGCGAGTATTTTCATTGGACTCATGCAGTATGGCTTGCAAATGACGGGTTTAACAAATGAACAATCCAACGTAGT
AATTGGTATTATCCTTATTCTTTCAGTTATTATGAGACATTTCAAATTACATCAATTCACACTGGGGAAAAGAAAGAATT
TTGCATAA

Upstream 100 bases:

>100_bases
CGGTGTACTTTGGATGAACGGAATATCTATTTTGTTTGCTGTCATAATATCTCTAATAATTAGTTGTTTAGCAGGCGCTT
TAAACGGATTTATTATAAAA

Downstream 100 bases:

>100_bases
GGGGGAAATGTCATGAAGAGAAAACTAGGGATTGTATTCATTGTATGTATTTGTTTAATCGGTTTAATCGCCTGTTCTAG
TCAAACCGCAGATAAGAAAA

Product: inner membrane ABC transporter permease protein YdeZ

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRH
VKLTGANENAAKYTGIKTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGT
VLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNFA

Sequences:

>Translated_215_residues
MTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRH
VKLTGANENAAKYTGIKTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGT
VLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNFA
>Mature_214_residues
TDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRHV
KLTGANENAAKYTGIKTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTV
LASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNFA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=216, Percent_Identity=42.1296296296296, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1790191, Length=199, Percent_Identity=31.1557788944724, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788896, Length=163, Percent_Identity=34.3558282208589, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790524, Length=201, Percent_Identity=32.3383084577114, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI145693152, Length=202, Percent_Identity=30.1980198019802, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1787793, Length=191, Percent_Identity=31.413612565445, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082395, Length=199, Percent_Identity=28.643216080402, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789992, Length=125, Percent_Identity=30.4, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 22482; Mature: 22351

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWL
CCCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCEECHHHHHHH
LIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIKTKKVVIIAYMLSGLGGGLGGTFL
HHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
TAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLT
HHHHCCHHCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC
NEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWL
CCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCEECHHHHHHH
LIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIKTKKVVIIAYMLSGLGGGLGGTFL
HHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
TAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLT
HHHHCCHHCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC
NEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA