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The map label for this gene is lsrB [H]

Identifier: 218904087

GI number: 218904087

Start: 2808880

End: 2809923

Strand: Reverse

Name: lsrB [H]

Synonym: BCAH820_2971

Alternate gene names: 218904087

Gene position: 2809923-2808880 (Counterclockwise)

Preceding gene: 218904088

Following gene: 218904085

Centisome position: 52.99

GC content: 36.78

Gene sequence:

>1044_bases
ATGAAGAGAAAACTAGGGATTGTATTCATTGTATGTATTTGTTTAATCGGTTTAATCGCCTGTTCTAGTCAAACCGCAGA
TAAGAAAAAAGCGGATGATGTGAAATTTGCATTTATCCCGAAATTAACAGGAGTTGGATTCTTTACATCAGGTGGTGAAG
GAGCAAAAGAGATGGGGGATAAACTAGGCGTACAAGTGAAATATGATGGACCATCTGAAGCGAGTGTTTCTGGGCAAGTA
AAATATATAAACAATTTCATTAATCAAAACTATGATGCACTTATGGTTTCTTCAACGTCAGTTGATGGTTTATCGCAATC
ACTGCAACGTGCTAAGAAAAAAGGGATGACTGTTTTAACTTGGGATTCCGATGTGAACCCGAAAGATCGTTCCTTTTATA
TAAGCCAAGGAACACCAGACCAACTTGCTAACTTATTAATTGAAATGACTTCCAAGCAAATTGGAGATAAAGGGAAAGTA
GCATTTTTTTATTCTAGCCCAACAGTAACAGATCAAAACCAATGGGTAACGAAAGCGAAAGAAATTATTAAAGAGAAATA
TCCGAACTGGGAAATTGTAACGACGCAGTACGGGGAAAATAATGCACAAAAGTCGTTATCAGTAGGGGAGAACATATTAA
AAACGTATCCGGATATTAATGCAGTCATTTGTCCAGATGCAACGGCACTTCCGGCAATGGCACAAGCAGCTGAAAATTTA
AAAATGGATAAAAAGGTTGTCGTAACTGGCTTCTCTACACCAAACGTTATGCGTGATTACGTAAAACGAGGAACAGTAGC
ACAATTTGGTTTATGGGACGTAAAACAACAAGGTGCACTCGCAACGTATGTAGCAAATGAAATTGTTGTAAAAGGGAAAA
AGTTAAAAGTAGGGGATAGCTTTAAAGTAAAAGGAATTGGAAAAGTGAAAGTAGAGCCAAACTCCATTCAAGGATATGAT
TATGAGGCAGAAGGAAACGGAATTATCGTACTACCAGAACGAGTCGTATTTACAAAGGATAATATTGATAAATATAATTT
TTAG

Upstream 100 bases:

>100_bases
AATTGGTATTATCCTTATTCTTTCAGTTATTATGAGACATTTCAAATTACATCAATTCACACTGGGGAAAAGAAAGAATT
TTGCATAAGGGGGAAATGTC

Downstream 100 bases:

>100_bases
TAACAAAAAACGTCCGATATATTCGGACGTTTTTATTTCTTCATTAATTATGAACCGTTTCTTTTTCATTTAATCCAAGG
GTACGACCTGTAGAAGTGTG

Product: putative sugar ABC transporter, sugar-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MKRKLGIVFIVCICLIGLIACSSQTADKKKADDVKFAFIPKLTGVGFFTSGGEGAKEMGDKLGVQVKYDGPSEASVSGQV
KYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLTWDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKV
AFFYSSPTVTDQNQWVTKAKEIIKEKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKVGDSFKVKGIGKVKVEPNSIQGYD
YEAEGNGIIVLPERVVFTKDNIDKYNF

Sequences:

>Translated_347_residues
MKRKLGIVFIVCICLIGLIACSSQTADKKKADDVKFAFIPKLTGVGFFTSGGEGAKEMGDKLGVQVKYDGPSEASVSGQV
KYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLTWDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKV
AFFYSSPTVTDQNQWVTKAKEIIKEKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKVGDSFKVKGIGKVKVEPNSIQGYD
YEAEGNGIIVLPERVVFTKDNIDKYNF
>Mature_347_residues
MKRKLGIVFIVCICLIGLIACSSQTADKKKADDVKFAFIPKLTGVGFFTSGGEGAKEMGDKLGVQVKYDGPSEASVSGQV
KYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLTWDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKV
AFFYSSPTVTDQNQWVTKAKEIIKEKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKVGDSFKVKGIGKVKVEPNSIQGYD
YEAEGNGIIVLPERVVFTKDNIDKYNF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=336, Percent_Identity=59.8214285714286, Blast_Score=400, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38085; Mature: 38085

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKLGIVFIVCICLIGLIACSSQTADKKKADDVKFAFIPKLTGVGFFTSGGEGAKEMGD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCHHHHHH
KLGVQVKYDGPSEASVSGQVKYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLT
HHCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEE
WDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKVAFFYSSPTVTDQNQWVTKAK
ECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHH
EIIKEKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
HHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHC
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKVGDS
CCCCEEEEEECCCHHHHHHHHHCCCEEECCCCCHHCCCCEEEEEHHHHEEECCEEECCCC
FKVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIDKYNF
EEECCCEEEEECCCCCCCCEEEECCCEEEEECCEEEEECCCCCCCCC
>Mature Secondary Structure
MKRKLGIVFIVCICLIGLIACSSQTADKKKADDVKFAFIPKLTGVGFFTSGGEGAKEMGD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCHHHHHH
KLGVQVKYDGPSEASVSGQVKYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLT
HHCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEE
WDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKVAFFYSSPTVTDQNQWVTKAK
ECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHH
EIIKEKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
HHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHC
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKVGDS
CCCCEEEEEECCCHHHHHHHHHCCCEEECCCCCHHCCCCEEEEEHHHHEEECCEEECCCC
FKVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIDKYNF
EEECCCEEEEECCCCCCCCEEEECCCEEEEECCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA