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The map label for this gene is fadR [H]

Identifier: 218903878

GI number: 218903878

Start: 2633707

End: 2634318

Strand: Direct

Name: fadR [H]

Synonym: BCAH820_2762

Alternate gene names: 218903878

Gene position: 2633707-2634318 (Clockwise)

Preceding gene: 218903873

Following gene: 218903880

Centisome position: 49.67

GC content: 34.48

Gene sequence:

>612_bases
TTGAAAAACACTACTCTTTCATCAAGAAAACACCGCTCCTTAGAAACAAAGAAGAAACTATTACACTCTGGTTACACTAT
TTTTATTCGTAACGGATTTCAAAAAACGACAATTACACAAATTATTAAACACGCTGAAACCGGTTATGGCACGGCATATG
TATACTTTAAAAACAAAGATGATCTCCTCATCGTTTTAATGGAAGATGTTATGAATCAATTTTATAATATCGCTGAGCGC
TCTTTTTCGCCTCAAACGACAGAAGAAGCACGTACAATGATCCAAAATCAAGTTAAAGCATTTCTACAATTAGCAGAGAA
AGAACGAGCAATTTTACAAGTTGTAGAAGAAGCAATTGGGTTATCAAAAGAGATACGTCAAAAATGGGACGAGATACGGG
AACGCTTTATAAACAGTATTACGCAAGATATTACATACTCTCAAGAAAGTGGGTTAGCACATTCTGAATTGAATAAAGAA
ATTGTAGCACGTGCTTGGTTTGCGATGAATGAGATGTTTCTTTGGACGATTGTGCAAAATGATAAAAAGATCGACCTAGA
GGAAATTGTGCATACATTGACGAAAATGTATACGACTGGTTTATATAAATAG

Upstream 100 bases:

>100_bases
TGATATAACGTCAATGATATTATGTCAGTTGACTTTATATATGAATTTCTTTTACAATACAGTTATATTTTCAGATATTT
CAGTACAAAGAGGTGATTCT

Downstream 100 bases:

>100_bases
CACACCTTCAATACATGAGGTGTGCTATTTTACATCTATAAAAATATATTATTTGGGTATGGTAGCGCTAAAGAAGGCTT
TTCAGATAATGAGAAATATT

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MKNTTLSSRKHRSLETKKKLLHSGYTIFIRNGFQKTTITQIIKHAETGYGTAYVYFKNKDDLLIVLMEDVMNQFYNIAER
SFSPQTTEEARTMIQNQVKAFLQLAEKERAILQVVEEAIGLSKEIRQKWDEIRERFINSITQDITYSQESGLAHSELNKE
IVARAWFAMNEMFLWTIVQNDKKIDLEEIVHTLTKMYTTGLYK

Sequences:

>Translated_203_residues
MKNTTLSSRKHRSLETKKKLLHSGYTIFIRNGFQKTTITQIIKHAETGYGTAYVYFKNKDDLLIVLMEDVMNQFYNIAER
SFSPQTTEEARTMIQNQVKAFLQLAEKERAILQVVEEAIGLSKEIRQKWDEIRERFINSITQDITYSQESGLAHSELNKE
IVARAWFAMNEMFLWTIVQNDKKIDLEEIVHTLTKMYTTGLYK
>Mature_203_residues
MKNTTLSSRKHRSLETKKKLLHSGYTIFIRNGFQKTTITQIIKHAETGYGTAYVYFKNKDDLLIVLMEDVMNQFYNIAER
SFSPQTTEEARTMIQNQVKAFLQLAEKERAILQVVEEAIGLSKEIRQKWDEIRERFINSITQDITYSQESGLAHSELNKE
IVARAWFAMNEMFLWTIVQNDKKIDLEEIVHTLTKMYTTGLYK

Specific function: Transcriptional regulator in fatty acid degradation. Represses transcription of genes required for fatty acid transport and beta-oxidation, including acdA, fadA, fadB, fadE, fadF, fadG, fadH, fadM, fadN, lcfA and lcfB. Binding of FadR to DNA is specifical

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR013570 [H]

Pfam domain/function: PF08359 TetR_C_4; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23812; Mature: 23812

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTTLSSRKHRSLETKKKLLHSGYTIFIRNGFQKTTITQIIKHAETGYGTAYVYFKNKD
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCC
DLLIVLMEDVMNQFYNIAERSFSPQTTEEARTMIQNQVKAFLQLAEKERAILQVVEEAIG
CEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSKEIRQKWDEIRERFINSITQDITYSQESGLAHSELNKEIVARAWFAMNEMFLWTIVQN
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECC
DKKIDLEEIVHTLTKMYTTGLYK
CCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNTTLSSRKHRSLETKKKLLHSGYTIFIRNGFQKTTITQIIKHAETGYGTAYVYFKNKD
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCC
DLLIVLMEDVMNQFYNIAERSFSPQTTEEARTMIQNQVKAFLQLAEKERAILQVVEEAIG
CEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSKEIRQKWDEIRERFINSITQDITYSQESGLAHSELNKEIVARAWFAMNEMFLWTIVQN
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECC
DKKIDLEEIVHTLTKMYTTGLYK
CCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]