Click here to switch to the map view.

The map label for this gene is ydcN [H]

Identifier: 218903579

GI number: 218903579

Start: 2340843

End: 2341400

Strand: Direct

Name: ydcN [H]

Synonym: BCAH820_2463

Alternate gene names: 218903579

Gene position: 2340843-2341400 (Clockwise)

Preceding gene: 218903577

Following gene: 218903581

Centisome position: 44.14

GC content: 33.15

Gene sequence:

>558_bases
ATGGAAGAAATTCAACTTATTTTGGCGAAAAATTTAAAGACAATACGAGAGAAGGAAAAGTTAAGTTTAGAAAAGGTTTC
CCAATTAACAGGTGTGAGTAAAACGATGATTGGACAAATTGAACGAGGAGAGTCAAGTCCAACATTAACAACGATATGGA
AAATTGCGAATGGTTTAAAAGTGTCTTTTACTTCTTTAATCAATAATCCGCAACCGGATACGAAAGTTATTTTACGAAAT
GATATTCAAGTATTATCAGAAGACAGTGGGAGATATAAAGTGTATCCTTCTTTTCCTTTCCAAGATGATAGGAACTTTGA
AATCTATACGGTTGAAATTGAAGCAGAAGGAAAATTAAGTTCGGAAGGACATAAAGAAGGGACCGAAGAATTTATAACAG
TGTTTGAAGGAGAATTGACAATTGAAATAAATGATTGTCAATATAAATTAAATAGTGGGGATGCAATTCGCTTTAAGGCG
GATAGACCACATACGTATCATAATTTTGGAAGAACGCTAACGCGGTTAAGTATGACCATTTATTATTCAGCTTCATAA

Upstream 100 bases:

>100_bases
ATTATTTTGTGTGTTATAATGACCGAAAAGAACAATATAACGTGTGCTTTTTATTATACATAACGGTCGTTATATTGTAT
ATAGTGTAGGGGTGTTTCTT

Downstream 100 bases:

>100_bases
ATTTACAGCTGACTTAAAAAACATAGAAAGGGGTAATGGTAAAACCATCTATAAGAGATGGTTTTATTTTTTATAATTCA
CAAAAAAAGACACTCATTTG

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINNPQPDTKVILRN
DIQVLSEDSGRYKVYPSFPFQDDRNFEIYTVEIEAEGKLSSEGHKEGTEEFITVFEGELTIEINDCQYKLNSGDAIRFKA
DRPHTYHNFGRTLTRLSMTIYYSAS

Sequences:

>Translated_185_residues
MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINNPQPDTKVILRN
DIQVLSEDSGRYKVYPSFPFQDDRNFEIYTVEIEAEGKLSSEGHKEGTEEFITVFEGELTIEINDCQYKLNSGDAIRFKA
DRPHTYHNFGRTLTRLSMTIYYSAS
>Mature_185_residues
MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINNPQPDTKVILRN
DIQVLSEDSGRYKVYPSFPFQDDRNFEIYTVEIEAEGKLSSEGHKEGTEEFITVFEGELTIEINDCQYKLNSGDAIRFKA
DRPHTYHNFGRTLTRLSMTIYYSAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=185, Percent_Identity=34.5945945945946, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1787557, Length=180, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21105; Mature: 21105

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEHHCCCE
VSFTSLINNPQPDTKVILRNDIQVLSEDSGRYKVYPSFPFQDDRNFEIYTVEIEAEGKLS
EEEHHHHCCCCCCCEEEEECCEEEEECCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCC
SEGHKEGTEEFITVFEGELTIEINDCQYKLNSGDAIRFKADRPHTYHNFGRTLTRLSMTI
CCCCCCCHHHEEEEECCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHEEEEEEEE
YYSAS
EEECC
>Mature Secondary Structure
MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEHHCCCE
VSFTSLINNPQPDTKVILRNDIQVLSEDSGRYKVYPSFPFQDDRNFEIYTVEIEAEGKLS
EEEHHHHCCCCCCCEEEEECCEEEEECCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCC
SEGHKEGTEEFITVFEGELTIEINDCQYKLNSGDAIRFKADRPHTYHNFGRTLTRLSMTI
CCCCCCCHHHEEEEECCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHEEEEEEEE
YYSAS
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]