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The map label for this gene is ywqM [H]

Identifier: 218903567

GI number: 218903567

Start: 2327678

End: 2328550

Strand: Reverse

Name: ywqM [H]

Synonym: BCAH820_2451

Alternate gene names: 218903567

Gene position: 2328550-2327678 (Counterclockwise)

Preceding gene: 218903571

Following gene: 218903566

Centisome position: 43.91

GC content: 32.3

Gene sequence:

>873_bases
ATGGAAATGAGACATGTTAAAACATTTTGTGCGATTGTTAAGTATGGTAGTTTTTCTAAAGCTGCTCATGCATTAGGTTA
TGCGCAATCTACAGTTACAGCGCATATGAAAGCATTAGAGAACAATTTACATATTCCTCTTTTCGATCGGTTAGGAAAAA
AAGTACTTCTTACAAAAGCAGGTCATCAATTTCATCCTTATGCTTTAGAATTACTTGCAATTTATGAAAAGGCGCAAGAA
ATCCCTCAAAATACCGATCAATTAGAAGGTACATTGAGTATTACATCAAACGAATCATTAGCAGTATATCGTTTACCACA
ACTATTACGTACTTACAAACAGAAAAATCCGAAAGTAAATATCGTACTTGAAACAAACACAAATGAACAAGCATTACAAA
AATTACATGAAGGAGAAACAGACGTTGTCTTCATAATTGGAGAAAGTATAGAACATAATGATTTTATTACATGTACTTTT
AGTAATGAAACATTTGGATGGATTTTACCACCCCATTATTCTACACAGTCTAATCCGTTTTGTTTATTAAAGGAAACTCA
GTTTATTTTTACTGAACAAAGCTGCGGTTATAGACCAATGGTAGATCGTTTTTTACGTCAAAGCGGGAATATTCCAGCTA
AAACATTTGAAACTTCCAACGTTGAAGTTATTAAACAATCTGTTATGTGTGAGTTAGGAATTTCAATTCTTCCTTACATC
GTTGTACAAGAAAATTGTCAAAAGGAACAAATACGATTTCACCCTATCGAAACTTCTTCTGTTATTCAAAGTCATGTAAT
CTATCATAAATCTAGATGGATCTCCCCTGTAGTACAGTCGTTTCTTTCACAATTAAAGGTAATGAAAGTATAA

Upstream 100 bases:

>100_bases
TATTTCTACAATTTCATTTTATAAGGAATTTAATCATTTGGAAAATTGAAATACGTGATATAATCATTCACAAATCATGA
TAATAAAAGAGGGATTGCTT

Downstream 100 bases:

>100_bases
AATAATATGAAAGAAAACATGAGTTGAAATCCTTTGAAGAATATCAACCCACGTTTTCTTTCATACTACTTATATAAAGG
CTGTTTTTATGAGTTTTTCG

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENNLHIPLFDRLGKKVLLTKAGHQFHPYALELLAIYEKAQE
IPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIEHNDFITCTF
SNETFGWILPPHYSTQSNPFCLLKETQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
VVQENCQKEQIRFHPIETSSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV

Sequences:

>Translated_290_residues
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENNLHIPLFDRLGKKVLLTKAGHQFHPYALELLAIYEKAQE
IPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIEHNDFITCTF
SNETFGWILPPHYSTQSNPFCLLKETQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
VVQENCQKEQIRFHPIETSSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV
>Mature_290_residues
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENNLHIPLFDRLGKKVLLTKAGHQFHPYALELLAIYEKAQE
IPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIEHNDFITCTF
SNETFGWILPPHYSTQSNPFCLLKETQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
VVQENCQKEQIRFHPIETSSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=305, Percent_Identity=26.2295081967213, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=26.4084507042254, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787806, Length=288, Percent_Identity=23.2638888888889, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI157672245, Length=290, Percent_Identity=22.0689655172414, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788887, Length=288, Percent_Identity=25, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=23.1707317073171, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=27.2108843537415, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790208, Length=289, Percent_Identity=24.5674740484429, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790399, Length=259, Percent_Identity=23.1660231660232, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787530, Length=294, Percent_Identity=20.0680272108844, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788296, Length=230, Percent_Identity=26.5217391304348, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=27.4647887323944, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790783, Length=299, Percent_Identity=23.7458193979933, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693105, Length=295, Percent_Identity=25.4237288135593, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994962, Length=244, Percent_Identity=25.4098360655738, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33149; Mature: 33149

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENNLHIPLFDRLGKKVLLTKA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECC
GHQFHPYALELLAIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVN
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHCCCEEE
IVLETNTNEQALQKLHEGETDVVFIIGESIEHNDFITCTFSNETFGWILPPHYSTQSNPF
EEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCE
CLLKETQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
EEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCHHHHHHH
VVQENCQKEQIRFHPIETSSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV
EECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENNLHIPLFDRLGKKVLLTKA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECC
GHQFHPYALELLAIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVN
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHCCCEEE
IVLETNTNEQALQKLHEGETDVVFIIGESIEHNDFITCTFSNETFGWILPPHYSTQSNPF
EEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCE
CLLKETQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
EEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCHHHHHHH
VVQENCQKEQIRFHPIETSSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV
EECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]