Click here to switch to the map view.

The map label for this gene is sbcD [H]

Identifier: 218903494

GI number: 218903494

Start: 2257119

End: 2258276

Strand: Direct

Name: sbcD [H]

Synonym: BCAH820_2378

Alternate gene names: 218903494

Gene position: 2257119-2258276 (Clockwise)

Preceding gene: 218903493

Following gene: 218903495

Centisome position: 42.57

GC content: 36.01

Gene sequence:

>1158_bases
ATGAAGTTATTTCATACAGCGGATTGGCATTTAGGAAAGCTTGTTCATGGCGTGTATATGACTGAAGATCAAAAGATTGT
ATTAGATCAGTTTGTACAAGCAGTTGAAGAAGAAAAACCAGATGCCGTAATTATTGCAGGGGATTTATATGACCGAGCAA
TTCCACCTACGGAAGCAGTAGACTTATTAAATGATGTGCTGCAAAAAATAGTGATTGATTTACAAACACCAGTTATTGCA
GTTGCTGGTAACCATGATAGTCCAGATCGTATTCATTTTGGAAGTAGTTTAATGAAGAAACAAGGATTATTTATTGTGGG
GCAATTTCAATTTCCCTATGAACCAATTATATTAAATGATGAACATGGCGAGGTTCACTTCCATCTCGTTCCATATGCGG
ATCCAAGTATAGTTAGACATGTATTGAAAAACGAAGACGTACGTTCTCATGATGATGCGATGCGTATTTTTATGAATGAG
CTTTCTGAAACGATGGATAAAGAAGCTAGACATGTATTTGTTGGTCATGCATTTGTAACTTCTGCTGGAGAAGCGGAAGA
GAATACAAGTGATGCTGAACGACCGCTTTCAATTGGTGGTGCTGAATACGTAAATAGTCATTATTTTGATAAGTTTCATT
ACACAGCGCTTGGACATTTACATCAAGCGCATTTCGTACGTAATGAGACAATTCGATATTCAGGTTCGCCACTTGCCTAT
TCTATTTCTGAAGAAAAACATAAAAAAGGATATTATATTGTGGAACTGAACGAGCAAGGTGAAGCAACAATTGAAAAAAG
GTTACTTACACCACGTCGTAGAATGCGAACAGTAGAAGCGAAAATAGATGAATTATTACAACATCCCGTAAGTGAAGATT
ACGTGTTTGTAAAATTATTAGATGAAAATCCTGTCTTGCAGCCAATGGAAAAAATACGCTCTGTATATCCAAATGCAATG
CATGTTGAAAGATCCATTCAAAGACGAGAGTTCACAGAGTCAAATGAAGCAACTGTTTCAAGACATAAAACGGATGATTT
ATCACTATTAAAAGCTTTTTATAAAGAAATGAAAGGCTTAGATTTATCAGAAGAGAAAGAACGTTTATTTGTAGAAGTAT
TACAAACAGTGCAAGAACGGGAAGGTGAACGAGGATGA

Upstream 100 bases:

>100_bases
TAGTGCAATGATACAAAAGTTAGAATGGGAGAACGGAAAAACTACAATAAACTATCAACTTGTATCACTAAATTCAGTAA
ATTAAAAGGAGCAGGAAACC

Downstream 100 bases:

>100_bases
GACCGATCCAGCTTATTATGACGGCATTTGGCCCATATAAACAGAAAGAAGTAATTGATTTTGACGATCTGGGAGAGCAT
CGTATTTTCGCCATTTCTGG

Product: putative exonuclease SbcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MKLFHTADWHLGKLVHGVYMTEDQKIVLDQFVQAVEEEKPDAVIIAGDLYDRAIPPTEAVDLLNDVLQKIVIDLQTPVIA
VAGNHDSPDRIHFGSSLMKKQGLFIVGQFQFPYEPIILNDEHGEVHFHLVPYADPSIVRHVLKNEDVRSHDDAMRIFMNE
LSETMDKEARHVFVGHAFVTSAGEAEENTSDAERPLSIGGAEYVNSHYFDKFHYTALGHLHQAHFVRNETIRYSGSPLAY
SISEEKHKKGYYIVELNEQGEATIEKRLLTPRRRMRTVEAKIDELLQHPVSEDYVFVKLLDENPVLQPMEKIRSVYPNAM
HVERSIQRREFTESNEATVSRHKTDDLSLLKAFYKEMKGLDLSEEKERLFVEVLQTVQEREGERG

Sequences:

>Translated_385_residues
MKLFHTADWHLGKLVHGVYMTEDQKIVLDQFVQAVEEEKPDAVIIAGDLYDRAIPPTEAVDLLNDVLQKIVIDLQTPVIA
VAGNHDSPDRIHFGSSLMKKQGLFIVGQFQFPYEPIILNDEHGEVHFHLVPYADPSIVRHVLKNEDVRSHDDAMRIFMNE
LSETMDKEARHVFVGHAFVTSAGEAEENTSDAERPLSIGGAEYVNSHYFDKFHYTALGHLHQAHFVRNETIRYSGSPLAY
SISEEKHKKGYYIVELNEQGEATIEKRLLTPRRRMRTVEAKIDELLQHPVSEDYVFVKLLDENPVLQPMEKIRSVYPNAM
HVERSIQRREFTESNEATVSRHKTDDLSLLKAFYKEMKGLDLSEEKERLFVEVLQTVQEREGERG
>Mature_385_residues
MKLFHTADWHLGKLVHGVYMTEDQKIVLDQFVQAVEEEKPDAVIIAGDLYDRAIPPTEAVDLLNDVLQKIVIDLQTPVIA
VAGNHDSPDRIHFGSSLMKKQGLFIVGQFQFPYEPIILNDEHGEVHFHLVPYADPSIVRHVLKNEDVRSHDDAMRIFMNE
LSETMDKEARHVFVGHAFVTSAGEAEENTSDAERPLSIGGAEYVNSHYFDKFHYTALGHLHQAHFVRNETIRYSGSPLAY
SISEEKHKKGYYIVELNEQGEATIEKRLLTPRRRMRTVEAKIDELLQHPVSEDYVFVKLLDENPVLQPMEKIRSVYPNAM
HVERSIQRREFTESNEATVSRHKTDDLSLLKAFYKEMKGLDLSEEKERLFVEVLQTVQEREGERG

Specific function: SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sbcD family [H]

Homologues:

Organism=Escherichia coli, GI1786598, Length=281, Percent_Identity=25.9786476868327, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004843
- InterPro:   IPR004593 [H]

Pfam domain/function: PF00149 Metallophos [H]

EC number: 3.1.11.-

Molecular weight: Translated: 44286; Mature: 44286

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFHTADWHLGKLVHGVYMTEDQKIVLDQFVQAVEEEKPDAVIIAGDLYDRAIPPTEAV
CCCEECCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCHHHH
DLLNDVLQKIVIDLQTPVIAVAGNHDSPDRIHFGSSLMKKQGLFIVGQFQFPYEPIILND
HHHHHHHHHHHHHHCCCEEEEECCCCCCCEEECCHHHHHHCCCEEEEEECCCCCCEEEEC
EHGEVHFHLVPYADPSIVRHVLKNEDVRSHDDAMRIFMNELSETMDKEARHVFVGHAFVT
CCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEHHHEE
SAGEAEENTSDAERPLSIGGAEYVNSHYFDKFHYTALGHLHQAHFVRNETIRYSGSPLAY
CCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEE
SISEEKHKKGYYIVELNEQGEATIEKRLLTPRRRMRTVEAKIDELLQHPVSEDYVFVKLL
ECCHHHCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
DENPVLQPMEKIRSVYPNAMHVERSIQRREFTESNEATVSRHKTDDLSLLKAFYKEMKGL
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCC
DLSEEKERLFVEVLQTVQEREGERG
CCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKLFHTADWHLGKLVHGVYMTEDQKIVLDQFVQAVEEEKPDAVIIAGDLYDRAIPPTEAV
CCCEECCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCHHHH
DLLNDVLQKIVIDLQTPVIAVAGNHDSPDRIHFGSSLMKKQGLFIVGQFQFPYEPIILND
HHHHHHHHHHHHHHCCCEEEEECCCCCCCEEECCHHHHHHCCCEEEEEECCCCCCEEEEC
EHGEVHFHLVPYADPSIVRHVLKNEDVRSHDDAMRIFMNELSETMDKEARHVFVGHAFVT
CCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEHHHEE
SAGEAEENTSDAERPLSIGGAEYVNSHYFDKFHYTALGHLHQAHFVRNETIRYSGSPLAY
CCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEE
SISEEKHKKGYYIVELNEQGEATIEKRLLTPRRRMRTVEAKIDELLQHPVSEDYVFVKLL
ECCHHHCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
DENPVLQPMEKIRSVYPNAMHVERSIQRREFTESNEATVSRHKTDDLSLLKAFYKEMKGL
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCC
DLSEEKERLFVEVLQTVQEREGERG
CCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA