Click here to switch to the map view.

The map label for this gene is yfkC [H]

Identifier: 218903404

GI number: 218903404

Start: 2172455

End: 2173348

Strand: Direct

Name: yfkC [H]

Synonym: BCAH820_2288

Alternate gene names: 218903404

Gene position: 2172455-2173348 (Clockwise)

Preceding gene: 218903403

Following gene: 218903405

Centisome position: 40.97

GC content: 32.89

Gene sequence:

>894_bases
ATGAGTTTATTAACGTATACTGAAGAATTTTTTAATTATGTAAGGGAGTTTTTGCTTTTAAGATTTTTACTATTTGCTTT
AGTGCTGATCATTATTTCTTTTGTAATAAACCGCATTATTGATTGGTTTTTTAGGAAATCAAGCTTTTTTGATGAAGAGG
TAGAGCAAACGATTCAAAGTGTGATTCGATCTATTTTTAGATATATCATTATCATCAGTCTAATCATATATTTAATTAGC
CAATTTGTAGATATAAAAAGTATCATTGCAGGTGCAGGGATAGCAGGGGTTGTTATCGGTTTTGCTGCACAACAGATGCT
GAAAGATGTTATATTAGGCTTTGCGAGATTAGCGGACAAAGAGTTTCGTGTTGGCGATTTTGTTACGTTTAACGGAACAA
ACTCAGGAACGATTGAGGAAATTAGTATTCGTTTTATGCAAATTCGTGAATGGTCAGGAAAACTCCTTACCATACCACAT
GGAGAGATTAGAACGATACAAAATTTTAATAAAGGCTGGATGCGAGTAATTGAACGGATTACAGTAAGTTATCAGGAAGA
TCCTACAAGAGTTAAGGAATTGTTAGAGGAAGTTTGTGTTAATTGTAATGAAAAATTGGCCCCAAGTCTTTATAAAGTAG
AGGATGAAGCTGTTGAACCTTTTAAATATGTAGGTGTTACAGATTTAAACCCGAATCTGAAATACGTTGGATATGAATTT
TGTATTACAGGTTTAATAAAGCCAGAAGATTATTTTGAAACTTCTAGACAAGTAAGATTTGAATTAATGTCTATGTTCCA
TAAGAATCAAGTACAAATGCCAGCAGCAAATATGCTTGTTAATACTGAAAGTTTACAGCATACCCATGGTGGACAATCTT
TATCGGACAGCTAA

Upstream 100 bases:

>100_bases
ATACATAGTAAGGGTAGCGGCATTTTAGAGTAGGATAATAGATTTTTCTAGAACAAACTGAGACGATTATGAATTTTTTA
ATTAGTAAGGAAGTGGTTAG

Downstream 100 bases:

>100_bases
AGTAGAACAGTTTATTGACGGAAATTTCGTTTTCAACATTGGAATAATAATAAAATGATTGATTTAAAAAAAGAGCTGAA
GGAATTCAGTTCTTTTTAAT

Product: mechanosensitive ion channel family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSLLTYTEEFFNYVREFLLLRFLLFALVLIIISFVINRIIDWFFRKSSFFDEEVEQTIQSVIRSIFRYIIIISLIIYLIS
QFVDIKSIIAGAGIAGVVIGFAAQQMLKDVILGFARLADKEFRVGDFVTFNGTNSGTIEEISIRFMQIREWSGKLLTIPH
GEIRTIQNFNKGWMRVIERITVSYQEDPTRVKELLEEVCVNCNEKLAPSLYKVEDEAVEPFKYVGVTDLNPNLKYVGYEF
CITGLIKPEDYFETSRQVRFELMSMFHKNQVQMPAANMLVNTESLQHTHGGQSLSDS

Sequences:

>Translated_297_residues
MSLLTYTEEFFNYVREFLLLRFLLFALVLIIISFVINRIIDWFFRKSSFFDEEVEQTIQSVIRSIFRYIIIISLIIYLIS
QFVDIKSIIAGAGIAGVVIGFAAQQMLKDVILGFARLADKEFRVGDFVTFNGTNSGTIEEISIRFMQIREWSGKLLTIPH
GEIRTIQNFNKGWMRVIERITVSYQEDPTRVKELLEEVCVNCNEKLAPSLYKVEDEAVEPFKYVGVTDLNPNLKYVGYEF
CITGLIKPEDYFETSRQVRFELMSMFHKNQVQMPAANMLVNTESLQHTHGGQSLSDS
>Mature_296_residues
SLLTYTEEFFNYVREFLLLRFLLFALVLIIISFVINRIIDWFFRKSSFFDEEVEQTIQSVIRSIFRYIIIISLIIYLISQ
FVDIKSIIAGAGIAGVVIGFAAQQMLKDVILGFARLADKEFRVGDFVTFNGTNSGTIEEISIRFMQIREWSGKLLTIPHG
EIRTIQNFNKGWMRVIERITVSYQEDPTRVKELLEEVCVNCNEKLAPSLYKVEDEAVEPFKYVGVTDLNPNLKYVGYEFC
ITGLIKPEDYFETSRQVRFELMSMFHKNQVQMPAANMLVNTESLQHTHGGQSLSDS

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=190, Percent_Identity=30, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 34329; Mature: 34198

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLTYTEEFFNYVREFLLLRFLLFALVLIIISFVINRIIDWFFRKSSFFDEEVEQTIQS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VIRSIFRYIIIISLIIYLISQFVDIKSIIAGAGIAGVVIGFAAQQMLKDVILGFARLADK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
EFRVGDFVTFNGTNSGTIEEISIRFMQIREWSGKLLTIPHGEIRTIQNFNKGWMRVIERI
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCCHHHHHHHHHH
TVSYQEDPTRVKELLEEVCVNCNEKLAPSLYKVEDEAVEPFKYVGVTDLNPNLKYVGYEF
HHHCCCCHHHHHHHHHHHHCCCCCHHCCHHHHCCHHHHCCHHCCCEECCCCCCHHHHHHH
CITGLIKPEDYFETSRQVRFELMSMFHKNQVQMPAANMLVNTESLQHTHGGQSLSDS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLLTYTEEFFNYVREFLLLRFLLFALVLIIISFVINRIIDWFFRKSSFFDEEVEQTIQS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VIRSIFRYIIIISLIIYLISQFVDIKSIIAGAGIAGVVIGFAAQQMLKDVILGFARLADK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
EFRVGDFVTFNGTNSGTIEEISIRFMQIREWSGKLLTIPHGEIRTIQNFNKGWMRVIERI
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCCHHHHHHHHHH
TVSYQEDPTRVKELLEEVCVNCNEKLAPSLYKVEDEAVEPFKYVGVTDLNPNLKYVGYEF
HHHCCCCHHHHHHHHHHHHCCCCCHHCCHHHHCCHHHHCCHHCCCEECCCCCCHHHHHHH
CITGLIKPEDYFETSRQVRFELMSMFHKNQVQMPAANMLVNTESLQHTHGGQSLSDS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]