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The map label for this gene is ydeL [H]

Identifier: 218903232

GI number: 218903232

Start: 2009961

End: 2011361

Strand: Reverse

Name: ydeL [H]

Synonym: BCAH820_2116

Alternate gene names: 218903232

Gene position: 2011361-2009961 (Counterclockwise)

Preceding gene: 218903235

Following gene: 218903229

Centisome position: 37.93

GC content: 35.9

Gene sequence:

>1401_bases
ATGGATTTTACTATCCCATTACAATTACAAAGTAAGAAACCCATTTACTTACAAATTTACGAATATATGAAACGAGAAAT
CTCTCAAGGATCACTACGTGCTGGTACACGCCTTCCTTCTCATAGAAATTTAGCTATGCAACTTAATGTGAGCCGTATTA
CAGTTGAATCCGCTTATCAACAATTACAAGCTGAAGGGTATGTAGAAAGCAAACCGAAACGTGGGATTTTTGTTGCGGAA
GTTGATATTGATGTCATTCAAAAGAAACAGCAAATTGCGTCAAACATTGCTAACAATAAAGAAAGCGAACAATATGATTA
TGATTGTAGTCAAGGACTTATTGATCAAAAGTCTTTTCCGATAACAAACTGGAAAAGAGCATTACACGAAACTTTATTTC
AGTATGAAGATGAATTATTTGCTAAAGAAGATCCACAAGGTGAGCTCGTTCTACGAGAACATATTTCAAAATATTTATAT
CATGCTCGCGGGGTACATTCTTCACCTGATCAAATTATTGTTGGAGCAGGTACGCAACCTCTTCTTTGGCTACTCCTTCA
ACTACTTGGTTCAAAAAAAGAATACGGAATCGAAAATCCTGGATTTCACCGTATACCTGCCATGATTCAAAGTTGTGGCC
TTCCTGTTCACCCGATTCCTTTAGATGATAAAGGGATTCATATTTCCACTTTGCGTGAATCGGGGGCCAATGTTGCATAT
GTCACTCCATCTCACCAATTCCCACTCGGAATCATTATGCCGTTATCTAGAAGACTCGAGTTATTAAAATGGGCAAATGA
TTGTAAGGGGTATATTATTGAAGATGATTACGACGGAGAATTTCGCTATATAGGAAAACCTATTCCTTCTTTACAAGGAC
TAGATTCAAATGAACGTGTTATTTATATGGGAACTTTCTCGAAATCTTTTTTACCTTCTTTACGAATGGGATATATCGTT
TTACCACCTCATCTTTTAAAAGTCTATAAAGAATTTGGTGGTATGTTTAAACAAACGGTTTCTACAATGCAACAACTTAC
CTTTGCTACCTTTATTCAAAGTGGTGATTGGGAACGTCATATTAACCGAAGTCGTACATTATATAAAAGAAAACATATTT
CTTTAATTAAATCTATTACAAACGAAATGGGAAATAACGTTCATATACTCGGTGAACAATCCGGACTTCATATTGTACTT
CACGTTCATAATGGGATGAACGAACGAGAACTTATTCATGCAGCTGCAAAACAACGTATTAAGTTATACCCTCTCTCGAC
ATACGATTCTGTTCATAATGTAAGGGAGGAATCGTATGTATTACTCGGTTTTGGCAGTATTCCAGAGGATTGTATCGAAA
CTGTTGTCAAATTACTGAAAAAAGCGTGGTTCCCTAAATAA

Upstream 100 bases:

>100_bases
TTCTAAATGTTATATCATTATTATAGAAAGTAACTGCCCTTAACTTAAGTGACAGTTCAATTCTTTTTTATAAGGACAGT
TTTAAAGGAGCGTTCATAAC

Downstream 100 bases:

>100_bases
GAATAGCTCCACGCAAGTTATACTTACGTGGAGCTATTTTATGTACTATTTTTCTGATCTCATTGCCCTTCCCGGACGTT
TGACACCAGTTGTTTCTGTT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MDFTIPLQLQSKKPIYLQIYEYMKREISQGSLRAGTRLPSHRNLAMQLNVSRITVESAYQQLQAEGYVESKPKRGIFVAE
VDIDVIQKKQQIASNIANNKESEQYDYDCSQGLIDQKSFPITNWKRALHETLFQYEDELFAKEDPQGELVLREHISKYLY
HARGVHSSPDQIIVGAGTQPLLWLLLQLLGSKKEYGIENPGFHRIPAMIQSCGLPVHPIPLDDKGIHISTLRESGANVAY
VTPSHQFPLGIIMPLSRRLELLKWANDCKGYIIEDDYDGEFRYIGKPIPSLQGLDSNERVIYMGTFSKSFLPSLRMGYIV
LPPHLLKVYKEFGGMFKQTVSTMQQLTFATFIQSGDWERHINRSRTLYKRKHISLIKSITNEMGNNVHILGEQSGLHIVL
HVHNGMNERELIHAAAKQRIKLYPLSTYDSVHNVREESYVLLGFGSIPEDCIETVVKLLKKAWFPK

Sequences:

>Translated_466_residues
MDFTIPLQLQSKKPIYLQIYEYMKREISQGSLRAGTRLPSHRNLAMQLNVSRITVESAYQQLQAEGYVESKPKRGIFVAE
VDIDVIQKKQQIASNIANNKESEQYDYDCSQGLIDQKSFPITNWKRALHETLFQYEDELFAKEDPQGELVLREHISKYLY
HARGVHSSPDQIIVGAGTQPLLWLLLQLLGSKKEYGIENPGFHRIPAMIQSCGLPVHPIPLDDKGIHISTLRESGANVAY
VTPSHQFPLGIIMPLSRRLELLKWANDCKGYIIEDDYDGEFRYIGKPIPSLQGLDSNERVIYMGTFSKSFLPSLRMGYIV
LPPHLLKVYKEFGGMFKQTVSTMQQLTFATFIQSGDWERHINRSRTLYKRKHISLIKSITNEMGNNVHILGEQSGLHIVL
HVHNGMNERELIHAAAKQRIKLYPLSTYDSVHNVREESYVLLGFGSIPEDCIETVVKLLKKAWFPK
>Mature_466_residues
MDFTIPLQLQSKKPIYLQIYEYMKREISQGSLRAGTRLPSHRNLAMQLNVSRITVESAYQQLQAEGYVESKPKRGIFVAE
VDIDVIQKKQQIASNIANNKESEQYDYDCSQGLIDQKSFPITNWKRALHETLFQYEDELFAKEDPQGELVLREHISKYLY
HARGVHSSPDQIIVGAGTQPLLWLLLQLLGSKKEYGIENPGFHRIPAMIQSCGLPVHPIPLDDKGIHISTLRESGANVAY
VTPSHQFPLGIIMPLSRRLELLKWANDCKGYIIEDDYDGEFRYIGKPIPSLQGLDSNERVIYMGTFSKSFLPSLRMGYIV
LPPHLLKVYKEFGGMFKQTVSTMQQLTFATFIQSGDWERHINRSRTLYKRKHISLIKSITNEMGNNVHILGEQSGLHIVL
HVHNGMNERELIHAAAKQRIKLYPLSTYDSVHNVREESYVLLGFGSIPEDCIETVVKLLKKAWFPK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=438, Percent_Identity=24.8858447488584, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790797, Length=385, Percent_Identity=26.7532467532467, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53352; Mature: 53352

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTIPLQLQSKKPIYLQIYEYMKREISQGSLRAGTRLPSHRNLAMQLNVSRITVESAYQ
CCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEHEEEHHHHHH
QLQAEGYVESKPKRGIFVAEVDIDVIQKKQQIASNIANNKESEQYDYDCSQGLIDQKSFP
HHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCC
ITNWKRALHETLFQYEDELFAKEDPQGELVLREHISKYLYHARGVHSSPDQIIVGAGTQP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHH
LLWLLLQLLGSKKEYGIENPGFHRIPAMIQSCGLPVHPIPLDDKGIHISTLRESGANVAY
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHCCCCEEEE
VTPSHQFPLGIIMPLSRRLELLKWANDCKGYIIEDDYDGEFRYIGKPIPSLQGLDSNERV
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCEE
IYMGTFSKSFLPSLRMGYIVLPPHLLKVYKEFGGMFKQTVSTMQQLTFATFIQSGDWERH
EEEECCCHHHCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
INRSRTLYKRKHISLIKSITNEMGNNVHILGEQSGLHIVLHVHNGMNERELIHAAAKQRI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCE
KLYPLSTYDSVHNVREESYVLLGFGSIPEDCIETVVKLLKKAWFPK
EEEECCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDFTIPLQLQSKKPIYLQIYEYMKREISQGSLRAGTRLPSHRNLAMQLNVSRITVESAYQ
CCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEHEEEHHHHHH
QLQAEGYVESKPKRGIFVAEVDIDVIQKKQQIASNIANNKESEQYDYDCSQGLIDQKSFP
HHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCC
ITNWKRALHETLFQYEDELFAKEDPQGELVLREHISKYLYHARGVHSSPDQIIVGAGTQP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHH
LLWLLLQLLGSKKEYGIENPGFHRIPAMIQSCGLPVHPIPLDDKGIHISTLRESGANVAY
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHCCCCEEEE
VTPSHQFPLGIIMPLSRRLELLKWANDCKGYIIEDDYDGEFRYIGKPIPSLQGLDSNERV
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCEE
IYMGTFSKSFLPSLRMGYIVLPPHLLKVYKEFGGMFKQTVSTMQQLTFATFIQSGDWERH
EEEECCCHHHCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
INRSRTLYKRKHISLIKSITNEMGNNVHILGEQSGLHIVLHVHNGMNERELIHAAAKQRI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCE
KLYPLSTYDSVHNVREESYVLLGFGSIPEDCIETVVKLLKKAWFPK
EEEECCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]