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The map label for this gene is ygiD [H]

Identifier: 218903014

GI number: 218903014

Start: 1798851

End: 1799612

Strand: Reverse

Name: ygiD [H]

Synonym: BCAH820_1897

Alternate gene names: 218903014

Gene position: 1799612-1798851 (Counterclockwise)

Preceding gene: 218903021

Following gene: 218903010

Centisome position: 33.94

GC content: 35.7

Gene sequence:

>762_bases
ATGATGCCATCATTATTTTTAGCACATGGTTCACCAATGCTCGCTATTCAAGATACAGACTATACACGTTTTTTAAAAAC
ACTTGGAGAAACGTATAAACCGAAAGCAATTGTTATTTTCACTGCTCACTGGGAAAGTGAAGTATTAACGATTTCCTCAT
CAGATAACGAATATGAAACAATTTATGATTTTGGAGGTTTTCCTCCAGAGTTATACGAAATTAAATATCGTGCAAAAGGT
TCTTCTAGCATTGCATCCATGTTAGAAACAAAGTTTAAAAACAAAGGTATTCCAGTCCATCATAATATGACGAGAGGTTT
AGATCATGGCTCATGGACACTCTTGCATCGCATGTATCCAGAAGCAAATATTCCTGTCGTACAAATATCAGTAAATCCAT
TCCTTTCTGCAAAAGAACAATTTAAGATTGGAGAAGCATTAAAAGGACTTGGACAGGAAGATATTTTAGTAATCGGTAGT
GGTGTTACCGTTCATAACTTACGAGCACTGAAATGGAATCAAACTACACCCGAACAATGGGCAATTGAATTTGATGATTG
GATTATTAAACATATGCAGGCTGCTGATAAAGATGCTTTATTTAATTGGGAGAAAAATGCTCCTCATGCACAATTAGCAG
TACCAAGAGCAGAGCATTTTGTACCTTTATTTATCGCTATGGGAAGTGGTGAAAATAACGGTGAAGTCATTCATCGCAGT
TACGAGCTTGGTACATTAAGTTATCTTTGTCTCCAATTTTAA

Upstream 100 bases:

>100_bases
TTTCCGATTAGCTGTCAAACTATTTATGTTGACGAAAACGTCATAAAATTATATAGTTACTTACATAAAGTAATTATTAT
ATTTTTAGGAGGTTTCTATT

Downstream 100 bases:

>100_bases
AGAAAAGGATGAAGCAATCTTTGCTTCATCCTTTTTTCATTCACTTAGTTAACTAACTTCCAAATGTCGTTTCTCTGATA
CCTCTTCATTCTTATTATGA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTISSSDNEYETIYDFGGFPPELYEIKYRAKG
SSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGS
GVTVHNLRALKWNQTTPEQWAIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
YELGTLSYLCLQF

Sequences:

>Translated_253_residues
MMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTISSSDNEYETIYDFGGFPPELYEIKYRAKG
SSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGS
GVTVHNLRALKWNQTTPEQWAIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
YELGTLSYLCLQF
>Mature_253_residues
MMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTISSSDNEYETIYDFGGFPPELYEIKYRAKG
SSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGS
GVTVHNLRALKWNQTTPEQWAIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
YELGTLSYLCLQF

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=260, Percent_Identity=36.5384615384615, Blast_Score=161, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28628; Mature: 28628

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTISSSDNEYET
CCCCEEEECCCEEEEEECCCHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCEEE
IYDFGGFPPELYEIKYRAKGSSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYP
EEECCCCCHHHEEEEEECCCCHHHHHHHHHHHHCCCCCEECCHHCCCCCCCEEEEEECCC
EANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGSGVTVHNLRALKWNQTTPEQW
CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCHHE
AIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
EEEHHHHHHHHHHHCCCCCEECCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEE
YELGTLSYLCLQF
ECCCHHHHHEECC
>Mature Secondary Structure
MMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTISSSDNEYET
CCCCEEEECCCEEEEEECCCHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCEEE
IYDFGGFPPELYEIKYRAKGSSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYP
EEECCCCCHHHEEEEEECCCCHHHHHHHHHHHHCCCCCEECCHHCCCCCCCEEEEEECCC
EANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGSGVTVHNLRALKWNQTTPEQW
CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCHHE
AIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
EEEHHHHHHHHHHHCCCCCEECCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEE
YELGTLSYLCLQF
ECCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]