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The map label for this gene is ydeD [H]

Identifier: 218902926

GI number: 218902926

Start: 1705764

End: 1706732

Strand: Reverse

Name: ydeD [H]

Synonym: BCAH820_1809

Alternate gene names: 218902926

Gene position: 1706732-1705764 (Counterclockwise)

Preceding gene: 218902927

Following gene: 218902925

Centisome position: 32.19

GC content: 34.06

Gene sequence:

>969_bases
ATGATGGATCCAAATCGTTTAAAAGGAATCATTATGGTTGTCATCGGTGCTTGTTTATGGGGCTTGTCCGGAACAGCTGC
ACAACAACTTTTTCAATATGACAATATTTCTACTGAATGGTTAGTTACAATCCGATTACTTATATCTGGCATTATCTTAC
TCATTATTGCATCATTCGGAACAAGCAAAAAAGAAATATTCGGCATTTGGAAACAAAGATCTGATGCTTATAAAATGATA
TTGTTTGGTTTATTCGGTATGCTTGCTGTACAGTATACGTATTTTGCTTCTATTAAAGAAGGAAATGCCGCCGTTGCAAC
ATTATTACAATATTTAGCTCCTATATTCATCACTGTATACTTACTTTTCAAATGGAACGTTCGTCCATCAAAAATTGATT
TCATTTCAATTACCCTTTCATTAGTAGGTACTTTCCTCTTACTAACAAACGGGTCTGTGCATAACTTAGCTGTTTCTACA
CCAGCTATTATTTGGGGGATTTTATCTGGATTATCTCTCGCTTTTTATAGTTTATATTCAAAGGGATTACTAGAAAGATG
GTCTTCCTCTGTTATCGTTGGATGGGGTATGATTATTGGGGGTATTGGTGTAACGATTGTACACTTTATTTCTACGAAAG
AATTTATTTTATTATCAACTGTGAAATATGTAAAATTAAGTACTCTACCGCTCATCACATTTGTCGTCATTTTTGGGACA
CTTATTGCCTTTTATTTATACTTAGACAGCATACGATACTTGACTCCGAAAGAAACGACATTATTCGGTTGTACTGAACC
ACTCGCAGCTATTATTTCTTCTGTACTTATATTACATGTACCGTTTCAATCTTTTCAGTTATTAGGGGCTTTTTGTGTCA
TTGTAATGGTGCTCATCTTAAGTCAAAAACCAGATGAAGGGAAACCAGAATTAAAGCTTGTTCATGAGAAAAAGGAAAAT
ATACAATGA

Upstream 100 bases:

>100_bases
TAACTTTACATTAAGTAAGAAATTTCAGTTTATTTCTAATCCGTTTCGTGATATATTGCATATTGTATACAATATATTTT
CTGAAAGGAGGACTCTATAC

Downstream 100 bases:

>100_bases
AAGGATTGAATTCACTATGCCTATCCCTCAAAATTATAAAAAACAAGGAAGAGTTTCGGCAAAATCACTTGTTTTAAATC
AACTACAAGATTGGATTATT

Product: transporter, EamA family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MMDPNRLKGIIMVVIGACLWGLSGTAAQQLFQYDNISTEWLVTIRLLISGIILLIIASFGTSKKEIFGIWKQRSDAYKMI
LFGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVYLLFKWNVRPSKIDFISITLSLVGTFLLLTNGSVHNLAVST
PAIIWGILSGLSLAFYSLYSKGLLERWSSSVIVGWGMIIGGIGVTIVHFISTKEFILLSTVKYVKLSTLPLITFVVIFGT
LIAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLILSQKPDEGKPELKLVHEKKEN
IQ

Sequences:

>Translated_322_residues
MMDPNRLKGIIMVVIGACLWGLSGTAAQQLFQYDNISTEWLVTIRLLISGIILLIIASFGTSKKEIFGIWKQRSDAYKMI
LFGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVYLLFKWNVRPSKIDFISITLSLVGTFLLLTNGSVHNLAVST
PAIIWGILSGLSLAFYSLYSKGLLERWSSSVIVGWGMIIGGIGVTIVHFISTKEFILLSTVKYVKLSTLPLITFVVIFGT
LIAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLILSQKPDEGKPELKLVHEKKEN
IQ
>Mature_322_residues
MMDPNRLKGIIMVVIGACLWGLSGTAAQQLFQYDNISTEWLVTIRLLISGIILLIIASFGTSKKEIFGIWKQRSDAYKMI
LFGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVYLLFKWNVRPSKIDFISITLSLVGTFLLLTNGSVHNLAVST
PAIIWGILSGLSLAFYSLYSKGLLERWSSSVIVGWGMIIGGIGVTIVHFISTKEFILLSTVKYVKLSTLPLITFVVIFGT
LIAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLILSQKPDEGKPELKLVHEKKEN
IQ

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=313, Percent_Identity=32.9073482428115, Blast_Score=155, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 35753; Mature: 35753

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDPNRLKGIIMVVIGACLWGLSGTAAQQLFQYDNISTEWLVTIRLLISGIILLIIASFG
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
TSKKEIFGIWKQRSDAYKMILFGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVY
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLFKWNVRPSKIDFISITLSLVGTFLLLTNGSVHNLAVSTPAIIWGILSGLSLAFYSLYS
HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
KGLLERWSSSVIVGWGMIIGGIGVTIVHFISTKEFILLSTVKYVKLSTLPLITFVVIFGT
HHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLIL
HHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SQKPDEGKPELKLVHEKKENIQ
CCCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MMDPNRLKGIIMVVIGACLWGLSGTAAQQLFQYDNISTEWLVTIRLLISGIILLIIASFG
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
TSKKEIFGIWKQRSDAYKMILFGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVY
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLFKWNVRPSKIDFISITLSLVGTFLLLTNGSVHNLAVSTPAIIWGILSGLSLAFYSLYS
HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
KGLLERWSSSVIVGWGMIIGGIGVTIVHFISTKEFILLSTVKYVKLSTLPLITFVVIFGT
HHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLIL
HHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SQKPDEGKPELKLVHEKKENIQ
CCCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]