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The map label for this gene is hfq1 [C]

Identifier: 218902840

GI number: 218902840

Start: 1633405

End: 1633593

Strand: Direct

Name: hfq1 [C]

Synonym: BCAH820_1723

Alternate gene names: 218902840

Gene position: 1633405-1633593 (Clockwise)

Preceding gene: 218902839

Following gene: 218902842

Centisome position: 30.8

GC content: 27.51

Gene sequence:

>189_bases
TTGGAACATTTACAAGAAGAGCTATATAAACAAATAAAAGAAGAAAAAGGTATTGTTACAATTTTTTTAAAGAGTGGCGT
TAGAATAGTAGGAGAAATTGTTGCAATAGACAAATTTACCGTTTTAATGTTAGTTGATGGAAAACAACAACTTATTTACA
AGCAGGCTGTATCAACAATAATGAAATAA

Upstream 100 bases:

>100_bases
ACTTATTAATAAGTTTATGAATGTAAAAGATAAAGTACATAAATAAAGAATTTGTAGTTTTTTATATTAAGATATTCAAT
GAAAAAGGAGAGAGATGTAT

Downstream 100 bases:

>100_bases
GACACTCGTGCTGAGTGTCTTATTTCATTATTGCTTACAAGCTTCAACGTCAATGCCAGCAGCTAATAATTTATTTTCAC
CATCTTGCTCAATGATTTTT

Product: host factor-I protein

Products: NA

Alternate protein names: Host Factor-I Protein; Hfq Protein

Number of amino acids: Translated: 62; Mature: 62

Protein sequence:

>62_residues
MEHLQEELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVSTIMK

Sequences:

>Translated_62_residues
MEHLQEELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVSTIMK
>Mature_62_residues
MEHLQEELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVSTIMK

Specific function: RNA-Binding Protein That Stimulates The Elongation Of Poly(A) Tails. Required For Phage Qbeta RNA Genome Replication; Function By Destabilizing An RNA Secondary Structure On The 3'End Of The Qbeta Phage. Binds Tightly To Qbeta RNA, Poly(A) RNA, Oxys RNA A

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7123; Mature: 7123

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHLQEELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVSTI
CCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHH
MK
CC
>Mature Secondary Structure
MEHLQEELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVSTI
CCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHH
MK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA