Click here to switch to the map view.

The map label for this gene is dnaD [H]

Identifier: 218902757

GI number: 218902757

Start: 1546692

End: 1547399

Strand: Direct

Name: dnaD [H]

Synonym: BCAH820_1640

Alternate gene names: 218902757

Gene position: 1546692-1547399 (Clockwise)

Preceding gene: 218902756

Following gene: 218902758

Centisome position: 29.17

GC content: 34.04

Gene sequence:

>708_bases
ATGAAAAAGAAAATGATGTTACAGTGGTTTGAACAGGGAAGCATCGCAATTCCAAAATTACTTATGATGCATTATAAAAA
ATTAGGATTAAATGAAACAGAATTTATGGTTGTACTTCATGTACATACATTTTTAGAATCGGGCAATTCGTTTCCGACTC
CGTCAGAGATTTCAGAACGGATGACGATTACTGAAATGAAATGTATGGAAGTCATTCAGACATTGATTCAAAAAGGTTTT
TTATCACTAGAAGGTGGACAAAAATCAGAAGCGATGATGTGTGAAAGTTATTCTTTACAACCGCTATGGGAAAAAATATT
GCATTTCTTAATGAATGAATCAATAGAGGAAGAGCAAAAAGAAATAAAGCAACTGCAAGTAAATTTATATACAGTATTTG
AAAAAGAATTTGGAAGACCACTTTCTCCATTTGAATGTGAAACGTTGGGAATGTGGGAAGATCAAGATCAACATCATCCG
AATTTAATTCAAGCGGCCCTCAGGGAAGCTGTAATGAGTGGTAAGCTTAATTTCCGATATATTGATCGTATTTTATTTGA
GTGGAAAAAGAATGGTATTAAAACAGTAGATCAAGCTCAAAACCAAGGACGGAAATTTAGAGCAAATCAACAACGAACGC
AGCAAACGACAAAACAAGAGACGAAATTTACTGGAAAAGTGCCTTTTTATAATTGGTTGGAGCAGTAG

Upstream 100 bases:

>100_bases
TGCAAAAAACCTTCCTACATAATAGGGAGGTTTTTTTGACGAATTGTGGCAAAAAGAAATGACGAAAGGTGTGTTATACT
AGAGAGCGAGGTGTTTGGTG

Downstream 100 bases:

>100_bases
TGTAGGAGGAAGTATATGTTAAATAAAACGCAAATTCGCTATTGTTTAGATACAATGGCGGATATGTACCCAGAAGCACA
TTGTGAATTAATTCATGATA

Product: DNA replication protein DnaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISERMTITEMKCMEVIQTLIQKGF
LSLEGGQKSEAMMCESYSLQPLWEKILHFLMNESIEEEQKEIKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHP
NLIQAALREAVMSGKLNFRYIDRILFEWKKNGIKTVDQAQNQGRKFRANQQRTQQTTKQETKFTGKVPFYNWLEQ

Sequences:

>Translated_235_residues
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISERMTITEMKCMEVIQTLIQKGF
LSLEGGQKSEAMMCESYSLQPLWEKILHFLMNESIEEEQKEIKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHP
NLIQAALREAVMSGKLNFRYIDRILFEWKKNGIKTVDQAQNQGRKFRANQQRTQQTTKQETKFTGKVPFYNWLEQ
>Mature_235_residues
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISERMTITEMKCMEVIQTLIQKGF
LSLEGGQKSEAMMCESYSLQPLWEKILHFLMNESIEEEQKEIKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHP
NLIQAALREAVMSGKLNFRYIDRILFEWKKNGIKTVDQAQNQGRKFRANQQRTQQTTKQETKFTGKVPFYNWLEQ

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 27771; Mature: 27771

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISER
CCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
MTITEMKCMEVIQTLIQKGFLSLEGGQKSEAMMCESYSLQPLWEKILHFLMNESIEEEQK
HHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH
EIKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHPNLIQAALREAVMSGKLNFRY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
IDRILFEWKKNGIKTVDQAQNQGRKFRANQQRTQQTTKQETKFTGKVPFYNWLEQ
HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCC
>Mature Secondary Structure
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISER
CCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
MTITEMKCMEVIQTLIQKGFLSLEGGQKSEAMMCESYSLQPLWEKILHFLMNESIEEEQK
HHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH
EIKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHPNLIQAALREAVMSGKLNFRY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
IDRILFEWKKNGIKTVDQAQNQGRKFRANQQRTQQTTKQETKFTGKVPFYNWLEQ
HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]