Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 218902477

GI number: 218902477

Start: 1295707

End: 1296627

Strand: Reverse

Name: xerC [H]

Synonym: BCAH820_1360

Alternate gene names: 218902477

Gene position: 1296627-1295707 (Counterclockwise)

Preceding gene: 218902478

Following gene: 218902476

Centisome position: 24.45

GC content: 40.39

Gene sequence:

>921_bases
ATGCTATTACGTTTTGCTATGAAGGAGTTCCAGGAAGAGAAAGAATACAACAACCTATCTCATAGGACAATTGAGGTCTA
CATGGCTACATTAAATGAATTCCGTAACTTTTGCTCCGAGCTGGAGATAGTTGATTTAAGAGACATTCGAGAGGTAACTG
TAAAGTCCTACCTCAGGTACTGCAAGAAAACGAGAGGGAATGGCGTAGTCACTTGCAACTCAAAGTTACATCACTTGAGG
ATATTCTTTAACTACTGGCAAAACGAGGAGGTAATGGAACACAAGGACAACCCTGTGAGAAAGCTCAAACCTGCTAAGGA
AGATACTAAGATAGAAGTCTTCACAGATTATCACATTCAGCAAATGCTTAGGTATTACCGTAGGTTAAAAACTAGAGATA
AATCATTCTTTGGTTACAGAGATCACGCTATCATTGTGCTCCTGCTGAGTACGGGAATCCGCCTAGGCGAGCTCGTGAAC
ATACAGTGGAAGGATATTGACTTAGTAAATCGATCAGTTGTCCTCTTTGGTAAAGCGAGGAAACAACAGAGTATACCTAT
TACAGATAAGCTAACAAAGGAGATATGCGAATGGAGAATCTTTGTAGAGAAGGAGCTAGGGAGTATACCTCAGTACCTGT
TCACCTCGAGGGAAGGGAAACAACTTTCACCTAATGCAGTAAAGTTAATCTTCCAAAGGTTATCTAAGGTGATGAACTTC
AAAGACGTACGTTTGAGTTGCCATACTTTCCGACACAGCTTTGCTCATAGATGTATCATGCAAGGAATGGACGTATTTAC
TTTGCAGAAGCTCCTCAGACACTCAAACCTTAGAATGACTGAAAGGTATTTATCTCTTTGGGGAACAGCTCTGCGAGAGC
AAAATGAGAAGTTTAATCCACTTAATTCACTTGAGATTTAA

Upstream 100 bases:

>100_bases
ACTCACAACTCGTAAAGAGGACTACTTAAAGTTAACCTATGAAGGTTAGCTAGGTAGTCCTCTTTTTTGTGTACAACTAC
ATAGAAAGGATTGGTGAGTT

Downstream 100 bases:

>100_bases
GACAAATAAAAAGAGAACCCTGCTCTAGTTTGGCGACCTGACAGGATTCTCTCTCGGAAGAAAACTCGAAGGAGCTTTCT
TGTTTGCTATTGTATCATGT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLLRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSELEIVDLRDIREVTVKSYLRYCKKTRGNGVVTCNSKLHHLR
IFFNYWQNEEVMEHKDNPVRKLKPAKEDTKIEVFTDYHIQQMLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVN
IQWKDIDLVNRSVVLFGKARKQQSIPITDKLTKEICEWRIFVEKELGSIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNF
KDVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNEKFNPLNSLEI

Sequences:

>Translated_306_residues
MLLRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSELEIVDLRDIREVTVKSYLRYCKKTRGNGVVTCNSKLHHLR
IFFNYWQNEEVMEHKDNPVRKLKPAKEDTKIEVFTDYHIQQMLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVN
IQWKDIDLVNRSVVLFGKARKQQSIPITDKLTKEICEWRIFVEKELGSIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNF
KDVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNEKFNPLNSLEI
>Mature_306_residues
MLLRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSELEIVDLRDIREVTVKSYLRYCKKTRGNGVVTCNSKLHHLR
IFFNYWQNEEVMEHKDNPVRKLKPAKEDTKIEVFTDYHIQQMLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVN
IQWKDIDLVNRSVVLFGKARKQQSIPITDKLTKEICEWRIFVEKELGSIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNF
KDVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNEKFNPLNSLEI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=273, Percent_Identity=27.4725274725275, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1789261, Length=286, Percent_Identity=24.8251748251748, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36699; Mature: 36699

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSELEIVDLRDIREVTVKSYLRY
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHH
CKKTRGNGVVTCNSKLHHLRIFFNYWQNEEVMEHKDNPVRKLKPAKEDTKIEVFTDYHIQ
HHHCCCCEEEEECCCCEEEEEEEHHCCCCHHHHCCCCCHHHCCCCCCCCEEEEEEHHHHH
QMLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNRSVVLFGKAR
HHHHHHHHHHHCCCCCCCCCCHHHEEEEECCCCCCCCEEEEEECCCHHHCCEEEEEECCC
KQQSIPITDKLTKEICEWRIFVEKELGSIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNF
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCH
KDVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNEKFNP
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
LNSLEI
CCCCCC
>Mature Secondary Structure
MLLRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSELEIVDLRDIREVTVKSYLRY
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHH
CKKTRGNGVVTCNSKLHHLRIFFNYWQNEEVMEHKDNPVRKLKPAKEDTKIEVFTDYHIQ
HHHCCCCEEEEECCCCEEEEEEEHHCCCCHHHHCCCCCHHHCCCCCCCCEEEEEEHHHHH
QMLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNRSVVLFGKAR
HHHHHHHHHHHCCCCCCCCCCHHHEEEEECCCCCCCCEEEEEECCCHHHCCEEEEEECCC
KQQSIPITDKLTKEICEWRIFVEKELGSIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNF
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCH
KDVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNEKFNP
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
LNSLEI
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA