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The map label for this gene is 218902444

Identifier: 218902444

GI number: 218902444

Start: 1263801

End: 1264340

Strand: Direct

Name: 218902444

Synonym: BCAH820_1326

Alternate gene names: NA

Gene position: 1263801-1264340 (Clockwise)

Preceding gene: 218902443

Following gene: 218902445

Centisome position: 23.83

GC content: 33.89

Gene sequence:

>540_bases
TTGAAGATAACGGAAGAAAATGTTGTGCAACAAATAAAAAAGCGTGATGAGAAAAGCATTACGTTTATTATTCAAACATA
CGGCGGTTTACTAAGCGCTATTATTAAAAGATATGTACAGAGCAATCAACAAGATTATGAAGAATGCTTAGATGATGTAT
TATTAGCGATTTGGTTTCATATCGATTCATTTGATTCAAGTAAAAATACGTTTAAACAATGGATAGCAGCCATTGCAAAA
TATCGGGCAATTGATTATCAGCGGAAAAATGTGAGAAATCAGCAACAAACTGTCTGTACGGAGATTAATGATCGTCTGTA
TCAAGAACAAAGAAAACAAAATGACTTCTTAGACGTACAGGAACTGCTTAGTGAGTTGTCAGCAACAGATCGTAACATTT
TTGAAAAGTATTATTTAGAAGGTGTACCGTCTCGTGAAATTGCATCCCATCTTAACGTGAAGGAGTCATGGATTCATAAC
AAACTGTCACGTGGACGAAAAAAGCTCAAACAGATTTTTATTTTTAAAAATGGAGTGTGA

Upstream 100 bases:

>100_bases
ATGAAATTATGTTTGTAATATTAAAAAATGCTGATAGGGTTATTGATTTTTATTCGTATTAGAAAGTAGGTACTAATTAG
CAGTGCAAGGAGGTCTAGCT

Downstream 100 bases:

>100_bases
GGGCATGTCTATTTATAAAGAGTTAAATGATATTCAGTTGGATATCACAGAGTTTGAGGAGACTCCCTTAACCAAACTAG
AGGAAAAGCAGTGGGAAAAA

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70factor; RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKITEENVVQQIKKRDEKSITFIIQTYGGLLSAIIKRYVQSNQQDYEECLDDVLLAIWFHIDSFDSSKNTFKQWIAAIAK
YRAIDYQRKNVRNQQQTVCTEINDRLYQEQRKQNDFLDVQELLSELSATDRNIFEKYYLEGVPSREIASHLNVKESWIHN
KLSRGRKKLKQIFIFKNGV

Sequences:

>Translated_179_residues
MKITEENVVQQIKKRDEKSITFIIQTYGGLLSAIIKRYVQSNQQDYEECLDDVLLAIWFHIDSFDSSKNTFKQWIAAIAK
YRAIDYQRKNVRNQQQTVCTEINDRLYQEQRKQNDFLDVQELLSELSATDRNIFEKYYLEGVPSREIASHLNVKESWIHN
KLSRGRKKLKQIFIFKNGV
>Mature_179_residues
MKITEENVVQQIKKRDEKSITFIIQTYGGLLSAIIKRYVQSNQQDYEECLDDVLLAIWFHIDSFDSSKNTFKQWIAAIAK
YRAIDYQRKNVRNQQQTVCTEINDRLYQEQRKQNDFLDVQELLSELSATDRNIFEKYYLEGVPSREIASHLNVKESWIHN
KLSRGRKKLKQIFIFKNGV

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21271; Mature: 21271

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITEENVVQQIKKRDEKSITFIIQTYGGLLSAIIKRYVQSNQQDYEECLDDVLLAIWFH
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
IDSFDSSKNTFKQWIAAIAKYRAIDYQRKNVRNQQQTVCTEINDRLYQEQRKQNDFLDVQ
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
ELLSELSATDRNIFEKYYLEGVPSREIASHLNVKESWIHNKLSRGRKKLKQIFIFKNGV
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKITEENVVQQIKKRDEKSITFIIQTYGGLLSAIIKRYVQSNQQDYEECLDDVLLAIWFH
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
IDSFDSSKNTFKQWIAAIAKYRAIDYQRKNVRNQQQTVCTEINDRLYQEQRKQNDFLDVQ
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
ELLSELSATDRNIFEKYYLEGVPSREIASHLNVKESWIHNKLSRGRKKLKQIFIFKNGV
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA