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The map label for this gene is cspA1 [H]

Identifier: 218902331

GI number: 218902331

Start: 1160376

End: 1160579

Strand: Direct

Name: cspA1 [H]

Synonym: BCAH820_1213

Alternate gene names: 218902331

Gene position: 1160376-1160579 (Clockwise)

Preceding gene: 218902328

Following gene: 218902332

Centisome position: 21.88

GC content: 39.41

Gene sequence:

>204_bases
ATGGCAGTAACAGGACAAGTAAAATGGTTTAACAACGAAAAAGGCTTCGGTTTCATCGAAGTTCCAGGCGAAAACGACGT
ATTCGTACATTTCTCTGCAATCGAAACTGACGGTTTCAAATCTCTAGAAGAAGGTCAAAAAGTTAGCTTCGAAATCGAAG
AAGGTAACCGTGGACCTCAAGCTAAAAACGTARTCAAACTATAA

Upstream 100 bases:

>100_bases
AGAACTAGTTTATGTTTCGTATTTGATAATGTGTGGATTCTTTTTTTAGATAGGAAAACTAAAAATTTTAAAAAATGTAT
TTTCTTAGGAGGAAATAATT

Downstream 100 bases:

>100_bases
TTTTATAGTTTATTATGGAAAAAAGGATGGCTGCTGCCATCCTTTTTTTTGTTGTCATATACGAGCATAATGATTATATT
GGGGGGAAAGCGGGGGATCT

Product: cold shock protein CspA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQAKNVXKL

Sequences:

>Translated_67_residues
MAVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQAKNVXKL
>Mature_66_residues
AVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQAKNVXKL

Specific function: Can bind to ATTGG and CCAAT motifs (Y-box motifs) of single stranded oligonucleotides [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=66.6666666666667, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=63.4920634920635, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=62.1212121212121, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=60.6060606060606, Blast_Score=82, Evalue=9e-18,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=59.0909090909091, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=59.0909090909091, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=48.3870967741936, Blast_Score=65, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7419; Mature: 7288

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQ
CCCCCCEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
AKNVXKL
CCCCCCC
>Mature Secondary Structure 
AVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQ
CCCCCEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
AKNVXKL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]