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The map label for this gene is 218902022

Identifier: 218902022

GI number: 218902022

Start: 863711

End: 864523

Strand: Reverse

Name: 218902022

Synonym: BCAH820_0904

Alternate gene names: NA

Gene position: 864523-863711 (Counterclockwise)

Preceding gene: 218902032

Following gene: 218902019

Centisome position: 16.3

GC content: 31.86

Gene sequence:

>813_bases
TTGCATACAGTATGGAAAGGTGCACTTTCACTTGGACTATTAAATATAGGAATTAAACTATATAGCGCCGTAGATGAAAA
CGATATAAAATTTTTAAGCCTCCATAAAGAATGCTTAACACCTATTAAATATAAAAAATTCGCTCCCGATTGTACAGATG
AAGAAGTCGATGATAAAGATATTGTAAAAGCCTATGAATACGCACCTCATAAGTACATTATTATGGATGAAAAAGAATTA
TCTGCGTTGCAAAAAGCTCACGAACCACGATCTATTCGTATTATATCTTTTATCCAAAATAACGAAATTGATTCTGTTCT
CTATGATCGTTCTTATTTTATAGGTCCCACTCCAGGACACGAAAAATCGTATCTATTATTAAAAGAAGCTCTTGAACGTA
CGAATAAACTTGGTCTTATCTATATTTCCATTAGAAAAAAACAACATTTAGCTATTATCCGTAACTTTGAAGATGGACTT
ATGTTGCAAACTATTCACTATCCTAATGAAATTCGCGATATAACAAATATACCTAACTTACCAAGTAACGAAAATTATCC
GATTCAAAAACAAGAACTCACCGCAGCTATTAATTTAATCCACCATCTTACAAACCCTTTCGAGCAAGAGTTATATACAG
ACGAATATAAAGAAGCTCTTACCGAATTAATCGAAAATAAAATTGAAGAACAAGAAAAAACGGAAACCATCTCTCCTGCT
CCAAACATCATCAATATTATGGAGACATTACAGGCAAGTATTGAACAAGCAAAAATAAAAAGAGACAATAAAACAGAAAA
AGAGGCCAAATAA

Upstream 100 bases:

>100_bases
CCTTCTGCTTACCCTTCCATAAAAAACAAAAAACGTATAGGAAATTTCTTACTATCTCATAATATACATAATCATTTTTG
AATGAAAGGAGAGGCCTCAT

Downstream 100 bases:

>100_bases
AATTGACCTCTTTTTCTTTAAAGCGGATTACATTTCGGCATTTCGAGTCCAGATGATTGGGCTAATTTTAATAAATAATA
ACATTCTTCTCTTGCCATAT

Product: Ku protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MHTVWKGALSLGLLNIGIKLYSAVDENDIKFLSLHKECLTPIKYKKFAPDCTDEEVDDKDIVKAYEYAPHKYIIMDEKEL
SALQKAHEPRSIRIISFIQNNEIDSVLYDRSYFIGPTPGHEKSYLLLKEALERTNKLGLIYISIRKKQHLAIIRNFEDGL
MLQTIHYPNEIRDITNIPNLPSNENYPIQKQELTAAINLIHHLTNPFEQELYTDEYKEALTELIENKIEEQEKTETISPA
PNIINIMETLQASIEQAKIKRDNKTEKEAK

Sequences:

>Translated_270_residues
MHTVWKGALSLGLLNIGIKLYSAVDENDIKFLSLHKECLTPIKYKKFAPDCTDEEVDDKDIVKAYEYAPHKYIIMDEKEL
SALQKAHEPRSIRIISFIQNNEIDSVLYDRSYFIGPTPGHEKSYLLLKEALERTNKLGLIYISIRKKQHLAIIRNFEDGL
MLQTIHYPNEIRDITNIPNLPSNENYPIQKQELTAAINLIHHLTNPFEQELYTDEYKEALTELIENKIEEQEKTETISPA
PNIINIMETLQASIEQAKIKRDNKTEKEAK
>Mature_270_residues
MHTVWKGALSLGLLNIGIKLYSAVDENDIKFLSLHKECLTPIKYKKFAPDCTDEEVDDKDIVKAYEYAPHKYIIMDEKEL
SALQKAHEPRSIRIISFIQNNEIDSVLYDRSYFIGPTPGHEKSYLLLKEALERTNKLGLIYISIRKKQHLAIIRNFEDGL
MLQTIHYPNEIRDITNIPNLPSNENYPIQKQELTAAINLIHHLTNPFEQELYTDEYKEALTELIENKIEEQEKTETISPA
PNIINIMETLQASIEQAKIKRDNKTEKEAK

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 31308; Mature: 31308

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTVWKGALSLGLLNIGIKLYSAVDENDIKFLSLHKECLTPIKYKKFAPDCTDEEVDDKD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHH
IVKAYEYAPHKYIIMDEKELSALQKAHEPRSIRIISFIQNNEIDSVLYDRSYFIGPTPGH
HHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHCCCEECCCCCCC
EKSYLLLKEALERTNKLGLIYISIRKKQHLAIIRNFEDGLMLQTIHYPNEIRDITNIPNL
CCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHEECCCCCEEEEEECCCHHHHHHHCCCCC
PSNENYPIQKQELTAAINLIHHLTNPFEQELYTDEYKEALTELIENKIEEQEKTETISPA
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PNIINIMETLQASIEQAKIKRDNKTEKEAK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MHTVWKGALSLGLLNIGIKLYSAVDENDIKFLSLHKECLTPIKYKKFAPDCTDEEVDDKD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHH
IVKAYEYAPHKYIIMDEKELSALQKAHEPRSIRIISFIQNNEIDSVLYDRSYFIGPTPGH
HHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHCCCEECCCCCCC
EKSYLLLKEALERTNKLGLIYISIRKKQHLAIIRNFEDGLMLQTIHYPNEIRDITNIPNL
CCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHEECCCCCEEEEEECCCHHHHHHHCCCCC
PSNENYPIQKQELTAAINLIHHLTNPFEQELYTDEYKEALTELIENKIEEQEKTETISPA
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PNIINIMETLQASIEQAKIKRDNKTEKEAK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA