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The map label for this gene is rbsC [H]

Identifier: 218901864

GI number: 218901864

Start: 700443

End: 701378

Strand: Direct

Name: rbsC [H]

Synonym: BCAH820_0725

Alternate gene names: 218901864

Gene position: 700443-701378 (Clockwise)

Preceding gene: 218901863

Following gene: 218901865

Centisome position: 13.21

GC content: 38.89

Gene sequence:

>936_bases
ATGGCTAAGAAGGGGAATGTATTACAACAACTTGGGTCTTTAATTGGACTAGCGCTAATTATTGTAGTAATTACGGCTTT
AAATCCAGCGTTTATTGAAATTCCAAATTTATTTAATATACTGCGTCAAGTATCGATTAATGCGCTTATTGCATTCGGAA
TGACCTTTGTAATTTTAACAGGGGGTATTGACTTATCGGTAGGTTCTATTTTAGCATTATCAAGTGCACTTGTTGCTGGA
ATGATGGCAAGTGGCATGGACCCGTTCCTTGCGATGGCAGTTGGATTATTAGCTGGTCTTGTAATGGGAATTGTAAACGG
TATCATCATAGCGAAGGGAAAAGTAGCTCCATTTATTGCGACTTTAGCAACAATGACTATTTTTCGTGGGTTGACGCTTG
TTTATATGGACGGACGTCCGATCACTGGTCTTGGTGATCATTTAATGTTCCAAATGTTTGGCCGCGGTTATTTTCTCGGT
ATTCCAGTACCAGCTGTTACAATGATGATCGCTTTCGCAGTACTGTACTTCATTTTGAAGAAAACGACATTTGGTCGCCG
TACATTTGCAATTGGTGGAAATGAAGAAGCAGCAGCATTATCAGGTATTAATGTTACGAAAATTAAAGTAATGATTTACG
GTCTTTCCGGAATTTTGGCAGCGCTTGCAGGTATTGTCTTAACATCACGACTAGATTCTGCACAGCCGACTGCAGGTACT
TCTTACGAATTAGATGCAATTGCAGCAGTTGTATTAGGTGGAACAAGTCTTTCTGGGGGAAGAGGATGGATTGTTGGTAC
ATTCATCGGTGTACTTATTATCGGTGTACTAAATAACGGTTTAAATTTATTAGGTGTATCTTCTTTCTTCCAACAAGTTG
TAAAAGGACTTGTAATCTTACTAGCTGTATTAATTGATCGTCGAAAAGAAGCGTAA

Upstream 100 bases:

>100_bases
GCGTTCTTGTTATTCATGAAGGAAAAGTCGGTGGCATTTTAGAGAAAGATGAGGCATCGCAAGAGTCTATTATGGCACTA
GCTACAGGGGGAGAGTAAGG

Downstream 100 bases:

>100_bases
TGGAGGGACAGTTTATGAAGAAATGGTTACTTATACTCGTTGCATGTATGATGGTCATTACTGCTGGTTGTTCAATGGAA
CCACCAGAATGGGCAAAGGA

Product: ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MAKKGNVLQQLGSLIGLALIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILTGGIDLSVGSILALSSALVAG
MMASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIATLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLG
IPVPAVTMMIAFAVLYFILKKTTFGRRTFAIGGNEEAAALSGINVTKIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGT
SYELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVILLAVLIDRRKEA

Sequences:

>Translated_311_residues
MAKKGNVLQQLGSLIGLALIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILTGGIDLSVGSILALSSALVAG
MMASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIATLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLG
IPVPAVTMMIAFAVLYFILKKTTFGRRTFAIGGNEEAAALSGINVTKIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGT
SYELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVILLAVLIDRRKEA
>Mature_310_residues
AKKGNVLQQLGSLIGLALIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILTGGIDLSVGSILALSSALVAGM
MASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIATLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLGI
PVPAVTMMIAFAVLYFILKKTTFGRRTFAIGGNEEAAALSGINVTKIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGTS
YELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVILLAVLIDRRKEA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=305, Percent_Identity=55.4098360655738, Blast_Score=303, Evalue=7e-84,
Organism=Escherichia coli, GI1788896, Length=299, Percent_Identity=41.4715719063545, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1790524, Length=301, Percent_Identity=42.5249169435216, Blast_Score=200, Evalue=8e-53,
Organism=Escherichia coli, GI145693152, Length=306, Percent_Identity=40.5228758169935, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789992, Length=362, Percent_Identity=33.7016574585635, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI87082395, Length=287, Percent_Identity=36.5853658536585, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1788471, Length=324, Percent_Identity=38.8888888888889, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787794, Length=295, Percent_Identity=33.5593220338983, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI145693214, Length=255, Percent_Identity=37.6470588235294, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787793, Length=282, Percent_Identity=33.6879432624113, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32348; Mature: 32216

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKGNVLQQLGSLIGLALIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILT
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGIDLSVGSILALSSALVAGMMASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIA
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHH
TLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLGIPVPAVTMMIAFAVLYFILK
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHH
KTTFGRRTFAIGGNEEAAALSGINVTKIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGT
HCCCCCEEEEECCCCCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SYELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVIL
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LAVLIDRRKEA
HHHHHHHHCCC
>Mature Secondary Structure 
AKKGNVLQQLGSLIGLALIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGIDLSVGSILALSSALVAGMMASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIA
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHH
TLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLGIPVPAVTMMIAFAVLYFILK
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHH
KTTFGRRTFAIGGNEEAAALSGINVTKIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGT
HCCCCCEEEEECCCCCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SYELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVIL
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LAVLIDRRKEA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]