Click here to switch to the map view.

The map label for this gene is yrbD [H]

Identifier: 218901833

GI number: 218901833

Start: 669962

End: 671119

Strand: Direct

Name: yrbD [H]

Synonym: BCAH820_0694

Alternate gene names: 218901833

Gene position: 669962-671119 (Clockwise)

Preceding gene: 218901832

Following gene: 218901834

Centisome position: 12.63

GC content: 39.46

Gene sequence:

>1158_bases
TTGGAAGCTTTCGTAAATTGGTTAAACAATATTGTTTGGAGTCCAGCACTTGTTTATTTATGTTTAGGAGTAGGTTTATA
TTTTTCTATTCGAACGAGGTTTTTACAAGTAAGGCATGTAGGAGAAATGGTGAAGCTGACATTTAAAGGAGAAAAATCAG
AGGCTGGTGTTTCTTCATTCCAAGCGTTAGCACTTTCGTTATCAGGGCGCGTTGGGACAGGGAATATCGCTGGGGTAGCT
ACAGCGGTTGCCTTCGGTGGACCAGGGGCTGTATTTTGGATGTGGGCAGTAGCCTTTTTAGGAGCAGGATCAGCTTATGT
AGAATCAACACTCGCGCAAATATATAAGACGAAACATCAAGGACAGTTTCGCGGTGGACCTGCTTATTACATTGAAAAAG
GTTTAGGGGTTAAATGGTATGCTTTAGTATTCGTTGCAGCGACAATTCTTGCAACGGGGCTTTTACTACCAGGTGTGCAA
GCAAATAGTATTGCTGTAAGTTTAGAAACGGCTTTTGGAATTAACACTTCATTATCAGGTGCTTTATTAGTAGTCGTATT
AGCTCTTATCATCTTCGGTGGAGTAAAGCGTATTGTTAACGTAGCGCAAGTTGTCGTACCGTTTATGGCTGTTGGGTATA
TTTTAGTAGCTTGTGTTATTGTCGCTATGAATATTGAAAAATTGCCAGAAGCATTTATGTTAATTATAAGAAGTGCGTTT
GCATTAGAAGCAGCATTTGGTGGTATTATCGGTTTAGCAATTTCTTGGGGAGTAAAACGTGGTATTTATTCTAATGAAGC
AGGGCAAGGAACTGGACCACATGCAGCAGCAGCTGCTGAAGTATCACATCCAGCTAAGCAAGGCTTAGTGCAAGCATTTT
CCGTTTACATTGATACATTATTTGTTTGTTCAGCAACAGCATTTATGATGATTATTACAGGCATGTATAACGTATTTGAT
GCAAGCGGAAAAAACTTTATCGTAAATAAATTAAATGGTGCACAGCCAGGACCGGGATATACACAGGCAGCAGTAGAATC
TGTTTTTTCCTGGATTTGGAAACGGTTTCGTTGCAATCTCGTTACTATTCTTTGCATTTACAACAATTATGGCGTATTAC
TACATTGCAGAAACGAATATCGCATACTTAAATCGTGA

Upstream 100 bases:

>100_bases
AAAATATGTTTGTTTTATTAAAATAATATTGTCATAGATTCGGTATACATTTATAATTTTTATATATTCTGAATATTCTT
GATAAAAAGGAGGGGGAATA

Downstream 100 bases:

>100_bases
TAAAGACCGTCCTTGGTTGTCTATGGTACTAAAATTTGTCTTTTTAGGTGCTGTATTCTACGGCTGTATAAAAAACAGCA
GCAACGGCTTGGGCTTTAGG

Product: sodium/alanine symporter family protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MEAFVNWLNNIVWSPALVYLCLGVGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSFQALALSLSGRVGTGNIAGVA
TAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQ
ANSIAVSLETAFGINTSLSGALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVFD
ASGKNFIVNKLNGAQPGPGYTQAAVESVFSWIWKRFRCNLVTILCIYNNYGVLLHCRNEYRILKS

Sequences:

>Translated_385_residues
MEAFVNWLNNIVWSPALVYLCLGVGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSFQALALSLSGRVGTGNIAGVA
TAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQ
ANSIAVSLETAFGINTSLSGALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVFD
ASGKNFIVNKLNGAQPGPGYTQAAVESVFSWIWKRFRCNLVTILCIYNNYGVLLHCRNEYRILKS
>Mature_385_residues
MEAFVNWLNNIVWSPALVYLCLGVGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSFQALALSLSGRVGTGNIAGVA
TAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQ
ANSIAVSLETAFGINTSLSGALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVFD
ASGKNFIVNKLNGAQPGPGYTQAAVESVFSWIWKRFRCNLVTILCIYNNYGVLLHCRNEYRILKS

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=322, Percent_Identity=40.9937888198758, Blast_Score=233, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 41170; Mature: 41170

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAFVNWLNNIVWSPALVYLCLGVGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHH
QALALSLSGRVGTGNIAGVATAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQ
HHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
GQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQANSIAVSLETAFGINTSLSG
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCHH
ALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
FVCSATAFMMIITGMYNVFDASGKNFIVNKLNGAQPGPGYTQAAVESVFSWIWKRFRCNL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
VTILCIYNNYGVLLHCRNEYRILKS
EEEEEEECCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MEAFVNWLNNIVWSPALVYLCLGVGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHH
QALALSLSGRVGTGNIAGVATAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQ
HHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
GQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQANSIAVSLETAFGINTSLSG
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCHH
ALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
FVCSATAFMMIITGMYNVFDASGKNFIVNKLNGAQPGPGYTQAAVESVFSWIWKRFRCNL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
VTILCIYNNYGVLLHCRNEYRILKS
EEEEEEECCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]