Click here to switch to the map view.

The map label for this gene is ydeL [H]

Identifier: 218901777

GI number: 218901777

Start: 605420

End: 606820

Strand: Direct

Name: ydeL [H]

Synonym: BCAH820_0638

Alternate gene names: 218901777

Gene position: 605420-606820 (Clockwise)

Preceding gene: 218901774

Following gene: 218901781

Centisome position: 11.42

GC content: 35.33

Gene sequence:

>1401_bases
ATGTTAGAATTAACGCCTAATTTAAATATGAATAGTAAAAAGGCATTGTACGTGCAATTGTATGAGTATATAAAAAAAGA
GATTAAGGATGGAACGATTTCCGCTTTTACAAAATTACCCGCAAAGAGAAAGCTGGCGGACTATTTACAAGTGAGTAAGA
ATACAATAGAAGCAGCTTACGAGCAATTACTTGCAGAAGGTTACATTGAGTCGATATCAAGAAAAGGTTATTTTGTATGT
AAATTTGAACAAATGATGGATGTAGAAGGAAGTGAAGCAGAAGTAGAAGAAATACCGTTTCGGGAGGGGAACTATACATT
CGATTTCACCCAAACAGGGGTTGATACGAATACTTTTCCTTTCACTACGTACCGCAAGTTTATAAATGATGTATGGCAGC
CGCGTAATAATGAGTTGTTTTTTCTTGGACACCCTCAAGGGGAGTTGAGCTTACGAGAGGAAATTGCGAACTATTTGTAT
GAATCTAGAGGTGTGCGTTGTTCAGCTAGTCAAATTGTATTAGGAGCGGGAACACAAATATTAGTGAAGTTACTTTTTCA
ATTGTTGAAGGGAAGTAATTATGCAGTTGAAAATCCAGGGTACCATAGGAAGATGGTCGTTTTTGAACAGGGAGAAGAAA
GAGTTCAAATGTTATCTTTAGATAAGGATGGCATTTGTATGGCAGATTTAGAAAATAGCGATGCAAATGTTGTATTTGTA
ACGCCCTCTCATCAATTCCCGTATGGAATGATTATGCCTATTACGAGAAGGACGCAGCTTTTACAATGGGCGCAGAAAGA
AGACGATAGGTATATTATTGAAGATGATTACGATAGCGAATTTCGTTATTCAGGAAAGCCAATTCCGGCACTACAAGGGT
TAGATACAGATGGGAAAGTAATTTATATGGGGACGCTATCAAAAGCTTTACTGCCCTCATTACGGATGAGCTATATAGTA
TTACCGAAGAATTTAATTAAAAAGTATCAAAAAGAATATTTGTTTTATACACAAAGTGTTTCAAGAATGGATCAAGAAGT
GGTTAGAAAGTTTTTACATGAAGGTTATTGGGAAAAACATATTCATAAAATGCGTGTCGTCTACCGAAAAAAGAGGGATC
GACTCGTCTTTGAAATAGAGAAATATTTCTCTAATCTTGTTGAGATAATAGGAGAAGATTCGGGATTACACATTTTATTA
AAAGTGCATAATGGAATGCGAGAAGAAGAACTAATTAAAGAAGCTGCAAAATATAGTATTAAAATATATCCTGTTTCGAC
GTACTACAAAGACGATACTGCACCTGAAAATGTAGTTTTACTTGGATTTGCGATATTATCAGAGGAAGAAATTGCGAAAG
CGATTCAATTATTACATAAGGCATGGTTTACAAGAAAGTAA

Upstream 100 bases:

>100_bases
GTATTTGATTTTTTGTGTGTGACATGATAAAAGGAATTATATATAACTTCTGGTACTGTAAAAAGTATCAGATTTTAGTT
TTATTAAGGGGTCAGATATT

Downstream 100 bases:

>100_bases
AAAAAACATCCTCCAAACATGAGGATGTTTTTTATTATTTATTTTCATCTAAGAATAAGACCATATGCTCTTCGTCCCAA
TATTGTCCGTTATATTTTAA

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLADYLQVSKNTIEAAYEQLLAEGYIESISRKGYFVC
KFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFPFTTYRKFINDVWQPRNNELFFLGHPQGELSLREEIANYLY
ESRGVRCSASQIVLGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEERVQMLSLDKDGICMADLENSDANVVFV
TPSHQFPYGMIMPITRRTQLLQWAQKEDDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKVIYMGTLSKALLPSLRMSYIV
LPKNLIKKYQKEYLFYTQSVSRMDQEVVRKFLHEGYWEKHIHKMRVVYRKKRDRLVFEIEKYFSNLVEIIGEDSGLHILL
KVHNGMREEELIKEAAKYSIKIYPVSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK

Sequences:

>Translated_466_residues
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLADYLQVSKNTIEAAYEQLLAEGYIESISRKGYFVC
KFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFPFTTYRKFINDVWQPRNNELFFLGHPQGELSLREEIANYLY
ESRGVRCSASQIVLGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEERVQMLSLDKDGICMADLENSDANVVFV
TPSHQFPYGMIMPITRRTQLLQWAQKEDDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKVIYMGTLSKALLPSLRMSYIV
LPKNLIKKYQKEYLFYTQSVSRMDQEVVRKFLHEGYWEKHIHKMRVVYRKKRDRLVFEIEKYFSNLVEIIGEDSGLHILL
KVHNGMREEELIKEAAKYSIKIYPVSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK
>Mature_466_residues
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLADYLQVSKNTIEAAYEQLLAEGYIESISRKGYFVC
KFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFPFTTYRKFINDVWQPRNNELFFLGHPQGELSLREEIANYLY
ESRGVRCSASQIVLGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEERVQMLSLDKDGICMADLENSDANVVFV
TPSHQFPYGMIMPITRRTQLLQWAQKEDDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKVIYMGTLSKALLPSLRMSYIV
LPKNLIKKYQKEYLFYTQSVSRMDQEVVRKFLHEGYWEKHIHKMRVVYRKKRDRLVFEIEKYFSNLVEIIGEDSGLHILL
KVHNGMREEELIKEAAKYSIKIYPVSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=308, Percent_Identity=23.3766233766234, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI33469970, Length=308, Percent_Identity=23.3766233766234, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1787710, Length=432, Percent_Identity=24.3055555555556, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1790797, Length=402, Percent_Identity=24.6268656716418, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54279; Mature: 54279

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLADYLQVSKNTIEAAY
CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EQLLAEGYIESISRKGYFVCKFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFP
HHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCC
FTTYRKFINDVWQPRNNELFFLGHPQGELSLREEIANYLYESRGVRCSASQIVLGAGTQI
HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCEEECCCHHH
LVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEERVQMLSLDKDGICMADLENSDANVVFV
HHHHHHHHHCCCCCEECCCCCCEEEEEEECCHHHHHHEECCCCCEEEEECCCCCCCEEEE
TPSHQFPYGMIMPITRRTQLLQWAQKEDDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKV
ECCCCCCCCEEECHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCE
IYMGTLSKALLPSLRMSYIVLPKNLIKKYQKEYLFYTQSVSRMDQEVVRKFLHEGYWEKH
EEEECCHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHKMRVVYRKKRDRLVFEIEKYFSNLVEIIGEDSGLHILLKVHNGMREEELIKEAAKYSI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCEE
KIYPVSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK
EEEEEEEEECCCCCCCCEEEEEEHHHCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLADYLQVSKNTIEAAY
CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EQLLAEGYIESISRKGYFVCKFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFP
HHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCC
FTTYRKFINDVWQPRNNELFFLGHPQGELSLREEIANYLYESRGVRCSASQIVLGAGTQI
HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCEEECCCHHH
LVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEERVQMLSLDKDGICMADLENSDANVVFV
HHHHHHHHHCCCCCEECCCCCCEEEEEEECCHHHHHHEECCCCCEEEEECCCCCCCEEEE
TPSHQFPYGMIMPITRRTQLLQWAQKEDDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKV
ECCCCCCCCEEECHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCE
IYMGTLSKALLPSLRMSYIVLPKNLIKKYQKEYLFYTQSVSRMDQEVVRKFLHEGYWEKH
EEEECCHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHKMRVVYRKKRDRLVFEIEKYFSNLVEIIGEDSGLHILLKVHNGMREEELIKEAAKYSI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCEE
KIYPVSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK
EEEEEEEEECCCCCCCCEEEEEEHHHCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]