Click here to switch to the map view.

The map label for this gene is yoeC [H]

Identifier: 218901716

GI number: 218901716

Start: 543100

End: 543642

Strand: Direct

Name: yoeC [H]

Synonym: BCAH820_0577

Alternate gene names: 218901716

Gene position: 543100-543642 (Clockwise)

Preceding gene: 218901715

Following gene: 218901717

Centisome position: 10.24

GC content: 34.25

Gene sequence:

>543_bases
ATGAACATTGTACAGCCGATTCGAAATAAAGAGATTATCCAAGAGATAAAGGAATTCTATAAGAAGCAGAATGAGAGAAA
CTACATTCTGTTTCTTCTTGGTATTAATACAGGCTTTAGGATATCAGATATATTGCGCTTGCGTGTTCGTGATGTAGAGG
GATGGAATATTGTTATACGTGAAAAGAAGACGAGGAAAATAAAAGATATTAAGATGCCATCAGAATTAAAGAAGGCAATT
CGCGATTATACAAAAGGAAAGCCGAAAACCGAGTATTTGATCAAAAGTCGGAACGGGAAAAATAAGCCAATTACAAGGGC
AATGGCTTATGTGATACTAAATCAAGCGGCGCAAGAGTTTGGATTAGAACGTATTGGGACACATTCTTTACGTAAAACGT
ACGGATATCATCATTATCAACAGTTTAGAGATGTAGCGGTTTTACAGCAAATGCTAAATCATACAGAGCAAAAAGAAACA
TTGAGATATATCGGAATTGAACAAGATACATTAAATGATTATCAAAGGAAATTTAAAATCTAA

Upstream 100 bases:

>100_bases
CATATTACAAAGTGAAAGGGAAAGCTCTATTACGTTTGGCCTTTAGTTTACGAAAAGAAGTGTTTAAGCAAAGTACACAA
AACGGAGAGGTAGAAACAGC

Downstream 100 bases:

>100_bases
TTTCTTTCTTTTTTTATCAATTTTTGAATTAGCTACAAACTGAACGTGTCAAATTCATTTCTGTAATAATACATGAAGGC
TTGATACATATGAGGTAAAT

Product: prophage LambdaBa02, site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MNIVQPIRNKEIIQEIKEFYKKQNERNYILFLLGINTGFRISDILRLRVRDVEGWNIVIREKKTRKIKDIKMPSELKKAI
RDYTKGKPKTEYLIKSRNGKNKPITRAMAYVILNQAAQEFGLERIGTHSLRKTYGYHHYQQFRDVAVLQQMLNHTEQKET
LRYIGIEQDTLNDYQRKFKI

Sequences:

>Translated_180_residues
MNIVQPIRNKEIIQEIKEFYKKQNERNYILFLLGINTGFRISDILRLRVRDVEGWNIVIREKKTRKIKDIKMPSELKKAI
RDYTKGKPKTEYLIKSRNGKNKPITRAMAYVILNQAAQEFGLERIGTHSLRKTYGYHHYQQFRDVAVLQQMLNHTEQKET
LRYIGIEQDTLNDYQRKFKI
>Mature_180_residues
MNIVQPIRNKEIIQEIKEFYKKQNERNYILFLLGINTGFRISDILRLRVRDVEGWNIVIREKKTRKIKDIKMPSELKKAI
RDYTKGKPKTEYLIKSRNGKNKPITRAMAYVILNQAAQEFGLERIGTHSLRKTYGYHHYQQFRDVAVLQQMLNHTEQKET
LRYIGIEQDTLNDYQRKFKI

Specific function: Fime Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fime Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21603; Mature: 21603

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIVQPIRNKEIIQEIKEFYKKQNERNYILFLLGINTGFRISDILRLRVRDVEGWNIVIR
CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
EKKTRKIKDIKMPSELKKAIRDYTKGKPKTEYLIKSRNGKNKPITRAMAYVILNQAAQEF
CCCHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
GLERIGTHSLRKTYGYHHYQQFRDVAVLQQMLNHTEQKETLRYIGIEQDTLNDYQRKFKI
CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNIVQPIRNKEIIQEIKEFYKKQNERNYILFLLGINTGFRISDILRLRVRDVEGWNIVIR
CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
EKKTRKIKDIKMPSELKKAIRDYTKGKPKTEYLIKSRNGKNKPITRAMAYVILNQAAQEF
CCCHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
GLERIGTHSLRKTYGYHHYQQFRDVAVLQQMLNHTEQKETLRYIGIEQDTLNDYQRKFKI
CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]