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The map label for this gene is ylmB [H]

Identifier: 218901633

GI number: 218901633

Start: 465533

End: 466807

Strand: Direct

Name: ylmB [H]

Synonym: BCAH820_0475

Alternate gene names: 218901633

Gene position: 465533-466807 (Clockwise)

Preceding gene: 218901631

Following gene: 218901635

Centisome position: 8.78

GC content: 39.76

Gene sequence:

>1275_bases
ATGAATCCAGACGTTTCACAGCTATTAGAACAGATTGAACTACGAAAAGATGAGTTACTAGAGCTTACAAAAACTTTAAT
TCGTTTTGAAACACCAGCACCGCCGGCGAGAAATACGAATGAGGCACAACAATTTGTTGCAGATTTTCTAAGAAAACGAA
ATTTTAGTGTTGATAAATGGGATGTATATCCGAATGATCCGAACGTTGTTGGGGTCAAAAAAGGGATAGAAAGTGAAACA
CATAAAAGTCTTATTATTAATGGACATATGGATGTAGCTGAAGTGTCAGCAGATGAGGCGTGGGAAACAAATCCGTTTGA
GCCATTTATAAAAGATGGTTGGTTAGTTGGACGTGGTGCAGCTGATATGAAAGGGGGACTAGCTGGAGCGTTATTCGCTA
TTCAGCTTTTACAAGAAGCTGGCATTGAGTTACCTGGAGATTTAATCTTTCAATCCGTAATTGGGGAAGAAGTTGGAGAA
GCTGGTACACTTCAATGTTGCAGGCGAGGTTATGATGCTGATTTTGCAGTCGTAGTGGATACGAGTGATTTACATATGCA
AGGACAGGGCGGCGTAATTACTGGGTGGATTACTGTGAAAAGCCCCCAAACGTTTCATGATGCAACGCGCAGACAAATGA
TCCATGCTGGAGGACGTTTATTCGGAGCGAGTGCGATTGAAAAAATGATGAAAATTGTACAAAGTTTACAGGAATTAGAG
CGGCATTGGGCAGTTATGAAAACATATGAAGGTTATCCGTCTGGAACAACAACAATTAATCCAGCTGTTATAGAAGGTGG
ACGACATGCAGCGTTTATTGCGGATGAGTGCCGTTTGTGGATAACCGTGCACTTTTATCCGAATGAAACACATGAACAAA
TAATAAAAGAAATTGAAGAGTATATCGGGAAAGTGGCAGCTGCCGATCCATGGTTAAGTGAAAATCCACCGCAATTTAAG
TGGGGCGGAGAATCAATGATTGTGGATCGTGGCGAAATTTTCCCTTCTTTAGAAATAGATAGTGAACATGCAGCTGTAAA
AACGCTTAGCTCAGCACACGAATCAGTTCTTTCTAAACATGCAATTTTAGATATGTCTGCAACGGTAACGGATGGTGGTT
GGTTTAGTGAATTTCATATTCCGGCTGTTATTTACGGACCAGGTACATTAGAAGAAGCTCATTCAATAAATGAGAAAGTT
GAAGTAGAGCAGTTAATTGAATTTACAAAAGTAATAACAGCATTTATATATGAATGGTGTCATACGAAAAAATAG

Upstream 100 bases:

>100_bases
TATAATATGTAGTAATTTAGAGACTGTAAAATTGTAAACAGTCTCTTTTTTTGTGAAAATAAAGCTGGAAACATACTACG
TATGCAAAGGGGAATTAGCG

Downstream 100 bases:

>100_bases
ATTAGTATGTTGAAATCGTACAGGTATGTATACTTGTACGATTTTTTTAGTGAACTATTTCAGAGTTGAATAGAAACAAC
TGAAATAGTTCTTTATTTTT

Product: acetylornithine deacetylase

Products: acetate; L-ornithine

Alternate protein names: Amidohydrolase; Formylaminopyrimidine deformylase [H]

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MNPDVSQLLEQIELRKDELLELTKTLIRFETPAPPARNTNEAQQFVADFLRKRNFSVDKWDVYPNDPNVVGVKKGIESET
HKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGAADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGE
AGTLQCCRRGYDADFAVVVDTSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEEYIGKVAAADPWLSENPPQFK
WGGESMIVDRGEIFPSLEIDSEHAAVKTLSSAHESVLSKHAILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKV
EVEQLIEFTKVITAFIYEWCHTKK

Sequences:

>Translated_424_residues
MNPDVSQLLEQIELRKDELLELTKTLIRFETPAPPARNTNEAQQFVADFLRKRNFSVDKWDVYPNDPNVVGVKKGIESET
HKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGAADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGE
AGTLQCCRRGYDADFAVVVDTSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEEYIGKVAAADPWLSENPPQFK
WGGESMIVDRGEIFPSLEIDSEHAAVKTLSSAHESVLSKHAILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKV
EVEQLIEFTKVITAFIYEWCHTKK
>Mature_424_residues
MNPDVSQLLEQIELRKDELLELTKTLIRFETPAPPARNTNEAQQFVADFLRKRNFSVDKWDVYPNDPNVVGVKKGIESET
HKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGAADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGE
AGTLQCCRRGYDADFAVVVDTSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEEYIGKVAAADPWLSENPPQFK
WGGESMIVDRGEIFPSLEIDSEHAAVKTLSSAHESVLSKHAILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKV
EVEQLIEFTKVITAFIYEWCHTKK

Specific function: Catalyzed the deformylation of formylaminopyrimidine to give aminopyrimidine [H]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1789236, Length=347, Percent_Identity=25.6484149855908, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790395, Length=379, Percent_Identity=22.1635883905013, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193211059, Length=171, Percent_Identity=28.6549707602339, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17563146, Length=184, Percent_Identity=27.1739130434783, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6319758, Length=172, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.5.1.16

Molecular weight: Translated: 47206; Mature: 47206

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPDVSQLLEQIELRKDELLELTKTLIRFETPAPPARNTNEAQQFVADFLRKRNFSVDKW
CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
DVYPNDPNVVGVKKGIESETHKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGA
ECCCCCCCEEEEHHCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCHHHHCCEEEECCC
ADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGEAGTLQCCRRGYDADFAVVVD
CHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEE
TSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
CCCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEE
HHHHHHHHHCCCCCCCCCCCHHEECCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHH
YIGKVAAADPWLSENPPQFKWGGESMIVDRGEIFPSLEIDSEHAAVKTLSSAHESVLSKH
HHHHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHHH
AILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKVEVEQLIEFTKVITAFIYEWC
HHEEEEEEEECCCCEEEECCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
HTKK
HCCC
>Mature Secondary Structure
MNPDVSQLLEQIELRKDELLELTKTLIRFETPAPPARNTNEAQQFVADFLRKRNFSVDKW
CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
DVYPNDPNVVGVKKGIESETHKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGA
ECCCCCCCEEEEHHCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCHHHHCCEEEECCC
ADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGEAGTLQCCRRGYDADFAVVVD
CHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEE
TSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
CCCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEE
HHHHHHHHHCCCCCCCCCCCHHEECCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHH
YIGKVAAADPWLSENPPQFKWGGESMIVDRGEIFPSLEIDSEHAAVKTLSSAHESVLSKH
HHHHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHHH
AILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKVEVEQLIEFTKVITAFIYEWC
HHEEEEEEEECCCCEEEECCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
HTKK
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N2-acetyl-L-ornithine; H2O

Specific reaction: N2-acetyl-L-ornithine + H2O = acetate + L-ornithine

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]