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The map label for this gene is yhfW [H]

Identifier: 218901557

GI number: 218901557

Start: 385194

End: 386720

Strand: Reverse

Name: yhfW [H]

Synonym: BCAH820_0399

Alternate gene names: 218901557

Gene position: 386720-385194 (Counterclockwise)

Preceding gene: 218901559

Following gene: 218901556

Centisome position: 7.29

GC content: 36.48

Gene sequence:

>1527_bases
ATGACAAGCGATACATTTCCACAATTCCCATCATCTTATTGGATTGAATCTACTCAACTCCCTACTTTTCCCCCTTTATC
TGAAAATATAAAGACAAAAGTTGCTGTTATCGGTGCTGGTATTACAGGTATTACTACTGCCTATTTACTTGCAAAAGAAG
GCATCGATGTTGTATTAATTGATTCTGGTCTTATTTTAAACGGGACGACTGGGCATACAACAGCAAAGATAACAGCGCAA
CATGATCTTATTTATGATGAATTAATAAATCATTTCGGTATGGAAAAGGCCGGACTTTACTATGAATCAAATAATCATGC
TCTACAATTTATTAATGAAACTGTGCAAACATATAAAATCGACTGTAATTTCTCAAATGAAGATTCATATTTATATACAA
CTACCGATAAGGGATTAAGAAATTTATCGAAAGAATATGAAGCCTATCAAAAATTAAATATACCTTGTGACTATGTTCAA
TCTCTATCGATTCCAATTCCAGTACAATCTGCACTTGTCATGAAAAACCAAGCACAATTCCATCCCCTTCTTTATTTGAA
AACACTTCTAGCAAAGTTTGTGGAAATGGGCGGAAAAGTTTATGAACAAACAACAGCTATGGATGTGGAAAAAGGAGATT
CTCCACAAATCATTACAAAGGAAGGCCATCGCATCACTTGTGAATATGTTGTTTCTTGTTCACATTTCCCTTTTTATGAT
GCAAATAGCTTTTTCTTTACGCGTATGTATGCTGAACGCTCTTATGCCCTTGCAATTAAAGCGAAAACAGATTATCCAGG
TGGTATGTATTTAAGTATTGATGATCCAAAACGGTCTTTACGCTATACAACAAACAATGGTGAAAAATTAATTTTAATTG
GCGGAGAAAGTCATAAAACAGGCCAAGGAATAAACACGATGCTTCATTATGAAGCACTGTATTCTTTTGCAGAAGCAACT
TTTGGAGTAGACGAGGCTCCTTATAGATGGTCAGCACAAGATTTAATCACGCTAGATAAGCTCCCTTATATCGGACATAT
TAACGAAAGGAATCCAAATATATTTGTTGCAACTGGATATCGTAAATGGGGAATGACAACTGGAACTACTGCCGCTCATT
TACTGAAGGATTCTATTCTAAAAGTACACAGTCCATATAAAGAACTCTATGCACCTTCACGCTTTCATGCAAATCCAGAT
ATAAAAACGTTCCTCTCCCAAAACATTGATGTTGCGAAACATTTAATTGAAGGAAAGATTGAAACCGCATTACGTAAGCC
AGAAGATCTCGAAGTTGGTGAAGGATCTGTCGTACATGTTAACGGGAAACGAGCAGGTGCTTATAAAGACAAAGAAGGAA
AATTACATATTGTCGATACAACTTGTACACATCTCGGCTGCGAAGTTGAGTGGAATAATGGTGATTGCACTTGGGATTGT
CCTTGTCACGGTTCCCGCTTTTCAATTGAGGGAGACGTTATTGAAGGTCCAGCAGATCAACCGTTAAAGCGAGTTGATAA
TGAGTAA

Upstream 100 bases:

>100_bases
TTTTAAATAAAAATAGCCTTCCTCTAAAACAGCACACATGAATTTCATCTCATATGGAAATATTAAAAGGAAAATTGTTC
TAAATCAGGAGGTTTCCTTA

Downstream 100 bases:

>100_bases
ACAAATAAAGAAGTTCAACAGAGTTCCTGTCGAACTTCTTTATTTGTTATAAAACCTTTTCAGATAAATTTCGACAGGAA
GGAGGAAAATATTAACATGA

Product: putative Rieske 2Fe-2S iron-sulfur protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MTSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGAGITGITTAYLLAKEGIDVVLIDSGLILNGTTGHTTAKITAQ
HDLIYDELINHFGMEKAGLYYESNNHALQFINETVQTYKIDCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQ
SLSIPIPVQSALVMKNQAQFHPLLYLKTLLAKFVEMGGKVYEQTTAMDVEKGDSPQIITKEGHRITCEYVVSCSHFPFYD
ANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYTTNNGEKLILIGGESHKTGQGINTMLHYEALYSFAEAT
FGVDEAPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTGTTAAHLLKDSILKVHSPYKELYAPSRFHANPD
IKTFLSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDC
PCHGSRFSIEGDVIEGPADQPLKRVDNE

Sequences:

>Translated_508_residues
MTSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGAGITGITTAYLLAKEGIDVVLIDSGLILNGTTGHTTAKITAQ
HDLIYDELINHFGMEKAGLYYESNNHALQFINETVQTYKIDCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQ
SLSIPIPVQSALVMKNQAQFHPLLYLKTLLAKFVEMGGKVYEQTTAMDVEKGDSPQIITKEGHRITCEYVVSCSHFPFYD
ANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYTTNNGEKLILIGGESHKTGQGINTMLHYEALYSFAEAT
FGVDEAPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTGTTAAHLLKDSILKVHSPYKELYAPSRFHANPD
IKTFLSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDC
PCHGSRFSIEGDVIEGPADQPLKRVDNE
>Mature_507_residues
TSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGAGITGITTAYLLAKEGIDVVLIDSGLILNGTTGHTTAKITAQH
DLIYDELINHFGMEKAGLYYESNNHALQFINETVQTYKIDCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQS
LSIPIPVQSALVMKNQAQFHPLLYLKTLLAKFVEMGGKVYEQTTAMDVEKGDSPQIITKEGHRITCEYVVSCSHFPFYDA
NSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYTTNNGEKLILIGGESHKTGQGINTMLHYEALYSFAEATF
GVDEAPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTGTTAAHLLKDSILKVHSPYKELYAPSRFHANPDI
KTFLSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDCP
CHGSRFSIEGDVIEGPADQPLKRVDNE

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=399, Percent_Identity=23.8095238095238, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 56920; Mature: 56789

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00136 SUBTILASE_ASP ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGAGITGITTAYLLAKEGIDVVLI
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEE
DSGLILNGTTGHTTAKITAQHDLIYDELINHFGMEKAGLYYESNNHALQFINETVQTYKI
ECCEEEECCCCCEEEEEEECHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCEEEEE
DCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQF
EEEECCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHCCCCCHH
HPLLYLKTLLAKFVEMGGKVYEQTTAMDVEKGDSPQIITKEGHRITCEYVVSCSHFPFYD
HHHHHHHHHHHHHHHHCCCEEHHHHEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCC
ANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYTTNNGEKLILIGGESHKT
CCCEEEEEEECCCCEEEEEEEECCCCCCEEEEECCCCCCEEEEECCCCEEEEECCCCCCC
GQGINTMLHYEALYSFAEATFGVDEAPYRWSAQDLITLDKLPYIGHINERNPNIFVATGY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEECCCCCCCEEEEECC
RKWGMTTGTTAAHLLKDSILKVHSPYKELYAPSRFHANPDIKTFLSQNIDVAKHLIEGKI
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDC
HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECHHHEEEEEEECCCCEEEEC
PCHGSRFSIEGDVIEGPADQPLKRVDNE
CCCCCEEEECCCEECCCCCCHHHHCCCC
>Mature Secondary Structure 
TSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGAGITGITTAYLLAKEGIDVVLI
CCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEE
DSGLILNGTTGHTTAKITAQHDLIYDELINHFGMEKAGLYYESNNHALQFINETVQTYKI
ECCEEEECCCCCEEEEEEECHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCEEEEE
DCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQF
EEEECCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHCCCCCHH
HPLLYLKTLLAKFVEMGGKVYEQTTAMDVEKGDSPQIITKEGHRITCEYVVSCSHFPFYD
HHHHHHHHHHHHHHHHCCCEEHHHHEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCC
ANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYTTNNGEKLILIGGESHKT
CCCEEEEEEECCCCEEEEEEEECCCCCCEEEEECCCCCCEEEEECCCCEEEEECCCCCCC
GQGINTMLHYEALYSFAEATFGVDEAPYRWSAQDLITLDKLPYIGHINERNPNIFVATGY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEECCCCCCCEEEEECC
RKWGMTTGTTAAHLLKDSILKVHSPYKELYAPSRFHANPDIKTFLSQNIDVAKHLIEGKI
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDC
HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECHHHEEEEEEECCCCEEEEC
PCHGSRFSIEGDVIEGPADQPLKRVDNE
CCCCCEEEECCCEECCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]