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The map label for this gene is ydcI [H]

Identifier: 218901448

GI number: 218901448

Start: 242566

End: 244734

Strand: Direct

Name: ydcI [H]

Synonym: BCAH820_0267

Alternate gene names: 218901448

Gene position: 242566-244734 (Clockwise)

Preceding gene: 218901447

Following gene: 218901449

Centisome position: 4.57

GC content: 36.61

Gene sequence:

>2169_bases
ATGGAAATGGTAGATAATCGACAAGCGTTAATGAAAATGTTAGTGAAGGAATTAGGCTTTACCGAAAAGCAAGTTCGTCA
TGTTATTCAATTAACAGAAGAAGGTAACACAGTTCCATTTATTGCTCGTTACCGAAAAGAATGGACAGGCTCTTTAGATG
AAGTGCAAATTCGTACAATTTTAGAGAGATGGCAATATATAATGCAGCTTGAAGATAGGAAAGAAGAGGTTCTTCGTCTT
ATTGATGAGAAGGGGAAACTGACAGGAGAATTACGTCAGCAAATTTTGAAAGCTACAAAGTTGCAAGAAGTAGAAGATTT
ATATCGTCCATATAAAGAAAAGAGAAGAACGAAAGCAACGATTGCAAAAGAAAAAGGATTAGAGCCATTGGCTGAATGGT
TATTGTTATATACGAAAGAAGATCCGAATCAGAAGGCAATGGAGTTTATAAATGCCGAGAAAGAAGTGCAATCTGCAGAA
GAAGCATTACAAGGTGCTCAAGACATCATTGCAGAAATCGTTTCAGATGAAGCGGCATATCGTAGTTGGATTCGGAATGT
TACTTTTAGAAAAGGTGTTATGTCTTCGGTTGTAAAAGATGAAGAGAAAGATGAAAAGAATATATATGAAATGTATTACG
ATTATGAAGAACCGTTGCAGAAAGTAGTACCGCATCGCGTGTTAGCGATGAATCGCGGTGAGAAAGAAGATATATTGAGA
GTTTCTGTTGTTCCGCCAGTAGATGAGATAGTAACTTTCTTATATAAGAAAGTAATTCGCGATAACGATTCAAAAAGTGC
ACAGTATGTAAAGTTAGCAATTGAGGATGGTTATAAAAGATTAATTCAATCCTCTATTGAAAGAGAGATTCGAAAAGAAT
TAACAGAAACAGCTGAGGAACAAGCGATACATATTTTCTCTGAGAACTTACGTAATTTGTTATTACAACCTCCAATGAAA
GGAAAGGTTGTGTTAGCTGTAGACCCTGCATATAGAACGGGGTGTAAATTAGCTATTGTAGACGATACGGGGAAAGTTTT
ATATATTGATGTTATTTATCCGCATCCACCAGTGCGTAAATATGAAGATGCCAAAGCGAAAGTTCTTTCTATTATAGATA
AATACCAAGTTGAGATGATTGCGATTGGGAATGGTACAGCTTCTAGAGAATCGGAAGAATTTATAGTTGATGTATTACAA
AATGTGAAACGAGAAGTCTTCTATATTATTGTGAACGAAGCTGGTGCGAGTGTGTATTCGGCTTCTGATTTAGCCCGTGA
GGAATTCCCGGATTTACAGGTTGAAGAAAGAAGTGCGGTTTCTATCGGTAGACGTCTGCAAGATCCACTTGCTGAACTTG
TAAAGATTGATCCTAAATCAGTTGGGGTTGGACAATATCAGCATGATGTATCTCAAAAAAGATTAAATGAATCATTAACG
TTTGTAGTAGAGACAGCAGTTAACCAAGTCGGTGTGAATGTAAATACAGCTTCAGTTGCATTGTTGCAATATGTTTCAGG
CTTATCAAAAACTGTTGCGAAAAATATTGTAGCAAAGCGTGAAGAAGAAGGGAAATTTACAAAAAGAACAGACTTAAAGA
AAATACCACGTCTAGGTGCGAAGACATATGAACAATGTATAGGTTTCTTGCGTATATTAGAAGGGGCAAATCCGTTAGAC
CGTACAGGTATTCATCCGGAACAATATAAAAATGTTGAATTGTTATTAAAGAGTCTAGGGTTATCAAAAGATGACGTAGG
GCAACCACAATTACAAAAGAGTTTAGAAGAAGTGGAGATTTCTAAGTTGTCGGAAGAAACGGGAATTGGAGAGCCGACAT
TAGTCGATATTATAGATGCACTCATTAGTCCAGAGCGAGACATGAGGGATGAGTTGCCTAAACCGCTTCTGAAAAAAGGG
ATTTTGAAATTAGAAGATTTAAAACGTGGTATGGAACTGGAAGGAACAGTACGTAACGTTGTTGATTTTGGTGCTTTTGT
TGATGTAGGTGTGAAACAAGATGGGTTAGTACATATTTCTAAACTAAGCAAACAATATGTGAAGCATCCGTTAGATGTTG
TATCTGTTGGACAAATCGTCAAAGTATGGGTAGATGATATTGATACGAAAAAAGGTCGTGTTGCATTATCTATGTTGCCA
ATTGAATAG

Upstream 100 bases:

>100_bases
CTACAAATTAGTTTAGGACTAATAGATTTTTAAATCGGCAGTTTAAGTTGCTCTCTTTGAAGGGCAACTTTTTTTATTAT
AGAGGAGGTTACGGTTGTAT

Downstream 100 bases:

>100_bases
TAAGAGAAGAGAGCAGATGAAACTGCTCTTTTTTTATAGGGCAAAACGTGTAATGGATTAGGAACTTTGATGTATTTTGC
TATAATAAAACCAGCATTCA

Product: S1 RNA binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 722; Mature: 722

Protein sequence:

>722_residues
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTILERWQYIMQLEDRKEEVLRL
IDEKGKLTGELRQQILKATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAE
EALQGAQDIIAEIVSDEAAYRSWIRNVTFRKGVMSSVVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
VSVVPPVDEIVTFLYKKVIRDNDSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFSENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRKYEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQ
NVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLRILEGANPLD
RTGIHPEQYKNVELLLKSLGLSKDDVGQPQLQKSLEEVEISKLSEETGIGEPTLVDIIDALISPERDMRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
IE

Sequences:

>Translated_722_residues
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTILERWQYIMQLEDRKEEVLRL
IDEKGKLTGELRQQILKATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAE
EALQGAQDIIAEIVSDEAAYRSWIRNVTFRKGVMSSVVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
VSVVPPVDEIVTFLYKKVIRDNDSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFSENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRKYEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQ
NVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLRILEGANPLD
RTGIHPEQYKNVELLLKSLGLSKDDVGQPQLQKSLEEVEISKLSEETGIGEPTLVDIIDALISPERDMRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
IE
>Mature_722_residues
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTILERWQYIMQLEDRKEEVLRL
IDEKGKLTGELRQQILKATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAE
EALQGAQDIIAEIVSDEAAYRSWIRNVTFRKGVMSSVVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
VSVVPPVDEIVTFLYKKVIRDNDSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFSENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRKYEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQ
NVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLRILEGANPLD
RTGIHPEQYKNVELLLKSLGLSKDDVGQPQLQKSLEEVEISKLSEETGIGEPTLVDIIDALISPERDMRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
IE

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=769, Percent_Identity=34.850455136541, Blast_Score=409, Evalue=1e-114,
Organism=Homo sapiens, GI27597090, Length=550, Percent_Identity=22.5454545454545, Blast_Score=76, Evalue=1e-13,
Organism=Escherichia coli, GI87082262, Length=721, Percent_Identity=44.7988904299584, Blast_Score=573, Evalue=1e-164,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=45.3333333333333, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=754, Percent_Identity=30.9018567639257, Blast_Score=269, Evalue=3e-72,
Organism=Caenorhabditis elegans, GI17552892, Length=315, Percent_Identity=25.0793650793651, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI62484314, Length=746, Percent_Identity=33.3780160857909, Blast_Score=384, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 82233; Mature: 82233

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTI
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
LERWQYIMQLEDRKEEVLRLIDEKGKLTGELRQQILKATKLQEVEDLYRPYKEKRRTKAT
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAEEALQGAQDIIAEIVSDEAAY
HHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RSWIRNVTFRKGVMSSVVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCHHHHHHCCCCHHCEEE
VSVVPPVDEIVTFLYKKVIRDNDSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEE
EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAIHIFSENLRNLLLQPPMKGKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRK
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCC
YEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQNVKREVFYIIVNEAGASVYS
CHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCHHH
ASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH
KTYEQCIGFLRILEGANPLDRTGIHPEQYKNVELLLKSLGLSKDDVGQPQLQKSLEEVEI
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
SKLSEETGIGEPTLVDIIDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTVRNV
HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
VDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
IE
CC
>Mature Secondary Structure
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTI
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
LERWQYIMQLEDRKEEVLRLIDEKGKLTGELRQQILKATKLQEVEDLYRPYKEKRRTKAT
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAEEALQGAQDIIAEIVSDEAAY
HHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RSWIRNVTFRKGVMSSVVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCHHHHHHCCCCHHCEEE
VSVVPPVDEIVTFLYKKVIRDNDSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEE
EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAIHIFSENLRNLLLQPPMKGKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRK
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCC
YEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQNVKREVFYIIVNEAGASVYS
CHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCHHH
ASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH
KTYEQCIGFLRILEGANPLDRTGIHPEQYKNVELLLKSLGLSKDDVGQPQLQKSLEEVEI
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
SKLSEETGIGEPTLVDIIDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTVRNV
HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
VDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
IE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]