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The map label for this gene is yjjV [C]

Identifier: 218901412

GI number: 218901412

Start: 211412

End: 212176

Strand: Direct

Name: yjjV [C]

Synonym: BCAH820_0231

Alternate gene names: 218901412

Gene position: 211412-212176 (Clockwise)

Preceding gene: 218901411

Following gene: 218901414

Centisome position: 3.99

GC content: 33.33

Gene sequence:

>765_bases
ATGAAATGGATTGATAGTCATATACATGTCGACCAATATAAGGATGAAGAGAAAAGTAGATTACTGAAAGATGTGGAAAA
TAGTAAAGAGATACAGGGGCTTATTGCGGTATCTATGAATTATCAATCAAGTAAAGAAACCTTATCTTTAGCCAAACGAT
ATTCCTTTGTACATCCAGCCATAGGTTTTCATCCGGAGCAACTGATTCATAAAGAAGAATGTGAGAAAATTTATAAATTA
ATTGAAGATCATGTAGAGGATATAGTAGCGATTGGTGAAGTAGGCTTACCGTATTACTTAAGAAAAGAAGATGAGCATAT
TGCTATCAATTCGTATATATCAGTGCTACAACAGTTTATTGAACTAGCTAGTAAATATGATTTACCAATTGTATTGCATG
CAGTGTATGAAGATGCTGATGTTGTATGTGATTTACTGGAGAAACATAAAGTTTCGCGTGCGCACTTTCATTGGTTTAAA
GGAAGTGAAACAACAATGGAACGGATGATGAGGAACGGTTATTATATTTCTATTACACCAGATGTTTTGCATAAGGAAAA
GATTAGAAAAATTGTTTCGTATTATCCTCTTGAATATATGATGGTAGAAACAGATGGACCGTGGGAATTTCAAGAGGGTG
TTATGACACATCCGGGAATGATTCGAGAGGTATTAAAGGAAATTAGTGTTATAAAAAACGTAGCTGTTGATAAGGTTGCA
GAAACGATATATGAAAATACAATTCAATTTTATTTGAAAGGATAG

Upstream 100 bases:

>100_bases
TATTGGATTATTTGATATCATAACAAACTTAATTGTTAAATAATATAGATGACAAAACAAGAAGGGAGATCCTTTCTTGT
TTTTTTATGGGGGAATAAGG

Downstream 100 bases:

>100_bases
AAGTGTTATTTTAGCCCTTCTTATTATAGAGAAATAGAAGTTGAATTTATTTATGAACATAATCAATGGGTTATTAATAA
TATGCCACGTTTTGGTTTAA

Product: putative deoxyribonuclease, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKETLSLAKRYSFVHPAIGFHPEQLIHKEECEKIYKL
IEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQQFIELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFK
GSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPGMIREVLKEISVIKNVAVDKVA
ETIYENTIQFYLKG

Sequences:

>Translated_254_residues
MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKETLSLAKRYSFVHPAIGFHPEQLIHKEECEKIYKL
IEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQQFIELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFK
GSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPGMIREVLKEISVIKNVAVDKVA
ETIYENTIQFYLKG
>Mature_254_residues
MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKETLSLAKRYSFVHPAIGFHPEQLIHKEECEKIYKL
IEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQQFIELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFK
GSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPGMIREVLKEISVIKNVAVDKVA
ETIYENTIQFYLKG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=216, Percent_Identity=27.3148148148148, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI110349734, Length=216, Percent_Identity=27.3148148148148, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI226061853, Length=223, Percent_Identity=26.457399103139, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI226061614, Length=209, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI226061595, Length=176, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=24.2307692307692, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=26.0536398467433, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI48994985, Length=200, Percent_Identity=25.5, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=24.3346007604563, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29772; Mature: 29772

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKETLSLAKRYSFVHPA
CCCCCCCCCHHHHCCHHHHHHHHHHHCHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCC
IGFHPEQLIHKEECEKIYKLIEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQQFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEHHHHHHHHHHHHH
ELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFKGSETTMERMMRNGYYISITP
HHHHCCCCCEEHHHHHCCHHHHHHHHHHHCCHHHHHEEECCCHHHHHHHHHCCEEEEECH
DVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPGMIREVLKEISVIKNVAVDKVA
HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ETIYENTIQFYLKG
HHHHHHHHHHEECC
>Mature Secondary Structure
MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKETLSLAKRYSFVHPA
CCCCCCCCCHHHHCCHHHHHHHHHHHCHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCC
IGFHPEQLIHKEECEKIYKLIEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQQFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEHHHHHHHHHHHHH
ELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFKGSETTMERMMRNGYYISITP
HHHHCCCCCEEHHHHHCCHHHHHHHHHHHCCHHHHHEEECCCHHHHHHHHHCCEEEEECH
DVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPGMIREVLKEISVIKNVAVDKVA
HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ETIYENTIQFYLKG
HHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]